GBrowse Details

Vigan.01G367800.01

Basic Information:
Name: Vigan.01G367800.01
Multiple alignment
Variant Information
Position: Chr01:50484411..50486437 (+ strand)
Length: 2027
Functional Information:
Description: Similar to Uncharacterized protein. [I1K0Z7, Glycine max]
GO: Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.08,1.68,5.68,0.00,2.15,0.04,0.13
Automatic updates:
Name: NM_001254980 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-like B1-like (LOC100791557), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:50484411..50484541 (+ strand)
Length: 131
Type: five_prime_UTR
Position: Chr01:50484542..50484665 (+ strand)
Length: 124
Type: CDS
Position: Chr01:50484754..50484860 (+ strand)
Length: 107
Type: CDS
Position: Chr01:50485280..50485461 (+ strand)
Length: 182
Type: CDS
Position: Chr01:50485596..50485728 (+ strand)
Length: 133
Type: CDS
Position: Chr01:50485908..50486111 (+ strand)
Length: 204
Type: CDS
Position: Chr01:50486112..50486437 (+ strand)
Length: 326
Type: three_prime_UTR

>Vigan.01G367800.01 class=Sequence position=Chr01:50484411..50486437 (+ strand)
GTCAAAGTTG GTAACATTGA CCAAATTCTC TATAAATAGG AGAAATTCGG TTCCCTCATT CATCACTAAA TTTGTCTTTG
TCTTCTTATC TTAATTGTTT CCTTTTAGTC TTTTATAATT CTGTCCTTAG CATGGCTCTT TCTCTTTTGT GTCCTCTTCT
TGCCACCTTT CTTTTCATGC AAACTCTGGC AGATACTTCC TTTATTCAAT CTCGTGCAGC ATATTACCCA AACTCTGAAG
AAAATGGCAC AGACGGTAAG AAAATTAAAC TGATTGAAGA CCACCAAACA CAAAGATGTA ATGGGATTTT GCTAACATAA
AATGTTCTAA TAACTTAATG CAGTTGGTGC ATGTGGATTT GGTTCCTTTG GTGCCACTGT TAATGGTGGG GATGTATCAG
CTGCATCTGA TCTTTATCGA AATGGTGTTG GCTGTGGTGC CTGTTACCAG GTGAGTTCTC ATCAAGCTAC ATACTTAGTT
ACATAAGCAT GCATATATGT TTTCTGATAA TGGAAACCAC AATTAATTAA TGCAGAACCC ATATGTAGGT TTATATCACT
TTTAATACAC ACAACTTTAT TCATTTTTTG TTGTGTTTGA CATTTCCTCT TGGTTAATCT TGCATTGCAA GAGCTCATAA
TCTATAATTC CATCAAAGGT TCAACATATA AATTAAAATA ACAATAAAGT ATACAGTAAA ATTCCAAACT GAAGTTATTA
TTTTTAATAT TATCTTAACA CTATTTTATG AGTTGTACTT GATAGACATT CTACAACAGC GCGTGGCAAA ATAACAGTAT
ACATTATATT ATAGTTCATT GTTTGAAAGT ATTATTTCTC ATTATAATTG GATTTGAGTC TATGGCCAGG TGAGATGTAG
CAATAGTGCT TATTGCTCAG GCAATGGTGT GACGATAGTA ATAACTGACC AAGGCTCAAG TGCTAACACT GACTTCATTC
TTAGCCAACG AGCTTTTGGT GGGATGGCTA TCAACAAGGA TGCAGCTGCT TCTCTATTAG CTCTTGGCGT AGTTGATATT
GAATATAGAC GGTGAGATGA TTCTTCCACA TGTGGAACAA TCTTTTTAAT TCATGCTGCA TCAACTATTA TATTTTCTTT
AATTATAGGT AGAATGTAGT CAATAAATTA AAGAGACTGA ACTAGGCCTC TCTCGTTATC TGCAGGGTTT CATGCAGCTA
CCCAGGCAAA AACATTACAG TTAAGATACA TGAGAGTAGC AACAACCCTC ACTATTTGGC TTTTGTCTTA TGGTTTCAAC
AAGGAAGTAA AGACATAACT GCTGTGCAAC TTTGCGAGGT ATGCTTTATC CTTCCCGTGG TAATAGTTTA TCAGCAATTT
TATCAAATCT TTGAATATCT AATTTAGTTA AGACCTTGGC GAAAGTTGAA TATTTCATTA AAAGGGTGAA CCAGTAGGGT
CCAGTTAGAT AGATGAAAAG TATTGTGATG AATTTAATAT CTTTTTGCTG AGTGCAGACT GAGAACTTTG TGTGCAAGTT
ACTGGATCGG AGTCATGGAG CAGTATGGAC CACCACTGCG CCACCGAGTG GACCTTTGGG TTTGAGGATG TTGTTTAGTG
ATGAAGAAGG GGAAGACGAA TCATGGATCG TTCCGGTTAA TAACATTCCA CAGGACTGGA AGGCTGAAGA AACGTACGAC
TTAGGGGTAC AAGTGAACTA ATAGAAGCAG AAAATTAATC ATTTATTAAT CTGCTTTGTA ACGAAATAAA AAATAAGTCA
AGTATAGTGA GTTCAATCGA TTTACCTTAT TTAATTGCCC TCCAATAATT TGTTTTTCTC AGAAGTAGCA AGGACTGAGG
ACATTTTGTG ATCTTACTGT AGCATGTCAC CCTACTCCCT GGATATTTCC TAGTTTAAAA TATTTCGATC ATGTTCACAA
GCATGCTGAA ATGTCATTTA GTTTCTCTGT AGCTTTCAAT TGATCAACAA TTGAGCCACT GAACTTGTCA TACCGTAAAT
CAATCACAAG GTAAACAGAC GAATATC

>Vigan.01G367800.01
GTCAAAGTTG GTAACATTGA CCAAATTCTC TATAAATAGG AGAAATTCGG TTCCCTCATT CATCACTAAA TTTGTCTTTG
TCTTCTTATC TTAATTGTTT CCTTTTAGTC TTTTATAATT CTGTCCTTAG CATGGCTCTT TCTCTTTTGT GTCCTCTTCT
TGCCACCTTT CTTTTCATGC AAACTCTGGC AGATACTTCC TTTATTCAAT CTCGTGCAGC ATATTACCCA AACTCTGAAG
AAAATGGCAC AGACGTTGGT GCATGTGGAT TTGGTTCCTT TGGTGCCACT GTTAATGGTG GGGATGTATC AGCTGCATCT
GATCTTTATC GAAATGGTGT TGGCTGTGGT GCCTGTTACC AGGTGAGATG TAGCAATAGT GCTTATTGCT CAGGCAATGG
TGTGACGATA GTAATAACTG ACCAAGGCTC AAGTGCTAAC ACTGACTTCA TTCTTAGCCA ACGAGCTTTT GGTGGGATGG
CTATCAACAA GGATGCAGCT GCTTCTCTAT TAGCTCTTGG CGTAGTTGAT ATTGAATATA GACGGGTTTC ATGCAGCTAC
CCAGGCAAAA ACATTACAGT TAAGATACAT GAGAGTAGCA ACAACCCTCA CTATTTGGCT TTTGTCTTAT GGTTTCAACA
AGGAAGTAAA GACATAACTG CTGTGCAACT TTGCGAGACT GAGAACTTTG TGTGCAAGTT ACTGGATCGG AGTCATGGAG
CAGTATGGAC CACCACTGCG CCACCGAGTG GACCTTTGGG TTTGAGGATG TTGTTTAGTG ATGAAGAAGG GGAAGACGAA
TCATGGATCG TTCCGGTTAA TAACATTCCA CAGGACTGGA AGGCTGAAGA AACGTACGAC TTAGGGGTAC AAGTGAACTA
ATAGAAGCAG AAAATTAATC ATTTATTAAT CTGCTTTGTA ACGAAATAAA AAATAAGTCA AGTATAGTGA GTTCAATCGA
TTTACCTTAT TTAATTGCCC TCCAATAATT TGTTTTTCTC AGAAGTAGCA AGGACTGAGG ACATTTTGTG ATCTTACTGT
AGCATGTCAC CCTACTCCCT GGATATTTCC TAGTTTAAAA TATTTCGATC ATGTTCACAA GCATGCTGAA ATGTCATTTA
GTTTCTCTGT AGCTTTCAAT TGATCAACAA TTGAGCCACT GAACTTGTCA TACCGTAAAT CAATCACAAG GTAAACAGAC
GAATATC

>Vigan.01G367800.01
ATGGCTCTTT CTCTTTTGTG TCCTCTTCTT GCCACCTTTC TTTTCATGCA AACTCTGGCA GATACTTCCT TTATTCAATC
TCGTGCAGCA TATTACCCAA ACTCTGAAGA AAATGGCACA GACGTTGGTG CATGTGGATT TGGTTCCTTT GGTGCCACTG
TTAATGGTGG GGATGTATCA GCTGCATCTG ATCTTTATCG AAATGGTGTT GGCTGTGGTG CCTGTTACCA GGTGAGATGT
AGCAATAGTG CTTATTGCTC AGGCAATGGT GTGACGATAG TAATAACTGA CCAAGGCTCA AGTGCTAACA CTGACTTCAT
TCTTAGCCAA CGAGCTTTTG GTGGGATGGC TATCAACAAG GATGCAGCTG CTTCTCTATT AGCTCTTGGC GTAGTTGATA
TTGAATATAG ACGGGTTTCA TGCAGCTACC CAGGCAAAAA CATTACAGTT AAGATACATG AGAGTAGCAA CAACCCTCAC
TATTTGGCTT TTGTCTTATG GTTTCAACAA GGAAGTAAAG ACATAACTGC TGTGCAACTT TGCGAGACTG AGAACTTTGT
GTGCAAGTTA CTGGATCGGA GTCATGGAGC AGTATGGACC ACCACTGCGC CACCGAGTGG ACCTTTGGGT TTGAGGATGT
TGTTTAGTGA TGAAGAAGGG GAAGACGAAT CATGGATCGT TCCGGTTAAT AACATTCCAC AGGACTGGAA GGCTGAAGAA
ACGTACGACT TAGGGGTACA AGTGAACTAA 

>Vigan.01G367800.01
MALSLLCPLL ATFLFMQTLA DTSFIQSRAA YYPNSEENGT DVGACGFGSF GATVNGGDVS AASDLYRNGV GCGACYQVRC
SNSAYCSGNG VTIVITDQGS SANTDFILSQ RAFGGMAINK DAAASLLALG VVDIEYRRVS CSYPGKNITV KIHESSNNPH
YLAFVLWFQQ GSKDITAVQL CETENFVCKL LDRSHGAVWT TTAPPSGPLG LRMLFSDEEG EDESWIVPVN NIPQDWKAEE
TYDLGVQVN*