GBrowse Details

Vigan.01G366200.01

Basic Information:
Name: Vigan.01G366200.01
Multiple alignment
Variant Information
Position: Chr01:50315283..50319652 (- strand)
Length: 4370
Functional Information:
Description: Similar to Ubiquitin family protein. [XP_007039552.1, Theobroma cacao]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Uncharacterised domain SAYSvFN (IPR019387)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.60,35.71,12.66,12.06,14.64,15.47, 19.90,13.79
Arabidopsis thaliana homolog: AT2G35360.1
Automatic updates:
Name: NM_001248414 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499994 (LOC100499994), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255661 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100793775 (LOC100793775), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255661 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SAYSvFN domain-containing protein (LOC100793775), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:50315283..50315727 (- strand)
Length: 445
Type: three_prime_UTR
Position: Chr01:50315728..50315821 (- strand)
Length: 94
Type: CDS
Position: Chr01:50316499..50316563 (- strand)
Length: 65
Type: CDS
Position: Chr01:50317034..50317143 (- strand)
Length: 110
Type: CDS
Position: Chr01:50317512..50317590 (- strand)
Length: 79
Type: CDS
Position: Chr01:50317683..50317759 (- strand)
Length: 77
Type: CDS
Position: Chr01:50318803..50318935 (- strand)
Length: 133
Type: CDS
Position: Chr01:50319414..50319515 (- strand)
Length: 102
Type: CDS
Position: Chr01:50319516..50319652 (- strand)
Length: 137
Type: five_prime_UTR

>Vigan.01G366200.01 class=Sequence position=Chr01:50315283..50319652 (- strand)
TTTATGAATC TCTTTTAGAA TGAATTAATT AATGGGTCTA AATTAGCTTT AATGGAATTA AAATGAATTT GATTCAAAAG
CATATTTTAA TTAATTGGTA TTGATGATGG TAGAGTGGTA CGTGGTTTGA TTCAGAGATG GGCATGGAGG AACAAGACTC
GGAGAAGAAG GTGGAGATCG TCCTCAAAAC TATTGGTCCT GCACGCCCCT CTCGCCTCCT ACTTCCTTCT TCCATCAAGG
TTTCTCTTCT AACTTCTTTC CCCCTTCAAT TCTCAATTTC TGCGTTTTTC ATTTTCAATT CCACCATCTC AATTCACACC
GTTTCAATCC ACTGTTGTTC TCCCCTCTTC TCTGGGGCGT TGGTAAAACA AAAAAAGAAT CAAAATTTAT ACCCTTTTCC
CTGATGACGA GATTTCAGTT GACAATGATA CTTCGCTAGG GTTAGTTGCA ATCGAATCAT GGACTATGCC AAGTGTGCCT
TCGTAACTCA AACTGCGAGT ATTTTTATTT TTGTTTGTTA ATGTTGTGTT TTTCCAAAAA GGGTGTTGTT TGGGAAGGGG
GGATCGAGGT GATCAAGCTA TGTTGATTCT GGCCCTGCCT TTCTTTGGGA AGAATGGTTA TGGTTTCATT TCTTTTAATT
AGTTTCTTTG GCGATCCATC TTGTTAACTA TAGGTGATAT TTTTTCATTT CTTTTGTTTC TTTTAAATCA CATATAGGTG
CGTGATTTGA GGAGGTTAGT TGCTGAGAAT GTTAATTTAC CAATTGAGAA CTTGAGTCTT ATTCTGCGTG GATGTGCTTT
GTGTGACATG AAAAATGGAG ATGAATTATC TGTACAACTC AATGATGGAG GTATAGTTCT AGTCCTAGTT TGGTTATTTG
ATAAATGCAC TATATTGACT TCTTTAAAGA AAAAGAAGAA TGTTCTATGA CATTGAGTGC TCATAGATGT AAAACACTCA
AATTCCTTAC AGTAACTTGA CACTACTTAC TTAGACTTTA ATTCACAATT ATACTAATTT AACTAAGCAC TGGTTTAACC
AGAGTGTTGT GATCTTGAAA AAAAATTAGG ATGACATGTG TCTACATGAT AACCATGTGA TCATTGATTT TTCATGTTAT
TACAAGATTA GTGATGACTA TGGAGGTTTA AGAAGCCCTT TTAATGGTTA TGTAATGTTT GGATGTGTTA CAATCGCCAT
ATTGGTTCAA ATAATCAATA GTTATACTAA TTTAATCAAT ACATTGTACT AGTTTAACCA ACATGTAAAA GTGTAAAATA
GGTGTATCCA AGATGGCGGT GTATGCTTAT AATTTTTTTC TGACATTTCC AACTTAAAGT TGCAACCTTC CGTAGTCTTT
GATATGGTCG CATCATTCAT CCTTTCAACT TTGTTATAGA TTTCGGACAA ATTTCTCCTT AAGTACTTTT ACGAGAGAAA
CAAGAAAAAA TGAAATGAAC TTCTTCCTTA GCTAAAATTA GCTCATATAT GAGTTTATTT GTACAAGTTC TCTCATGTAA
CTTCTCCAAA TTCTTATTTT TAACTTGTGC ATTAGCTAGC TTTAGCTTAT AAAGAAACTC ATTTCATTTT TTCTTCTTAT
TTTTCTCTCC TGGTAGTGTT TATGAAGAGA ATTATCCAGA TAAGCTCTTG ACAATTTTAC CTTTTGAAAA TAACTTTTGC
TTCTGGGACT GCATCAGTTG AAACCATTGT CTCCCTAACT TTATTCCTTG GTCTATTATA AAATAAAAAA TACCTCATTA
GTTGTTGATT ATATTGATTG ATTCTCTATC TTTTTTGGGG CTCTTACATT TTAAGTTTTT TTCTTTTATG CATTTGATCT
TAAATATTCC TACATCATAC AGAGATGTGA TTAATTGTTT TTTGATATAC TAGATAGCTT GATTGTTGCT GTCAAACCAA
AGCCACCCGT GAAGGATGAA TATGACAATG ATGATGATGA TGAAGATCTG GTAAAATCAA TTCATTATTA CCTAACAAAG
TGACCATAAC GTCAATTTGG TATGCATTTG ATTCAATGTC ATCTTGATTA CTTCTTCTGC AGAAGTTTCG GCTTCCTCAC
TCATCAAGTC GGTGGAAGAA GTGGCTTTAC ACTTTTCTAC ACGATAACTT GAAGCTTCCA GGTATGAAGC TGAATAAATG
GTATTTGTTT AGGCTTTAGT AAATCACTAT TGTCATCCTT CAAATATGTA ATCATTTACT GTTGAATCCA TAATGTTCAA
ATCATCATTT CACTTTATTT CTTGAATAAA TCATTCAAAT ATTCCTACTT CCAAATCTTC TAGTTATACC AATGTGGCCC
TTGAAGCATC TGCAGTATGT GTCACCATAA TCTGCTTGCT TGCAGACAAT TTAAACTGGG TCATTCAGCA GGTGTATGCA
TTATTCCAGG CATCAATATA GATGTTTGAA TCTCTCGTGG GCAATGATGA TGATAATAGT TCCCTTTGAC ATTAACAATC
TTCTAAAAAT GCTCATTCTT CATTCACAGA TGTTGTTTTG ATGGTAATTT TCACTCTGAG TCTGAAGGCG TGGCTTCTCA
TAACTTTGTG GTTTATCCTT GCTCCTGTCG CCCACAGATG GGATCTCGGA CCTTTGTATG TATGTCTCTT TCTTCCTTTC
TATTATTTGG GCTTTTAGTC CACTTACTAT CTGTTTTTTA TGGGTTCAAC TCCGCTATAT CTTGCCTATG AATAGCTTGG
ACTAGGGATG CTGCTCCATA AATTCGGTGC ACAAATTTCT GTATATAATT ATTTGTGATT TCTTTTGAAT CTGAATTCCC
CCTGAAACGA AGTTTGAAAA GAAAAGAGTC TTTTGTTGTT TGGGAGAAAA ACAATTATGA GCTTATGTTG TGTGAAAGTT
CTGTGGCACA TTTTACTCCT TTCTTGTCAT AATCTCATGG TTAGATCTTC ATCTGATGTG CTGAGAATTT CCATGCACCA
TTATGCCCTG AACCCATCAA TTCGATTTGA CATTGTAGAG ATTAAAATAA GATGTCTTAC AAGGGTACTC GCTGGTCATT
GTATACGATA AAATTTGTGT CTTTATTGCG TGTTTCAACT TTCGTGTAGA TACTTGCAAC TGGCTTTTGT CTCATTCTCT
TCAACCTTGG AAAGCGCCAA GCTGGTGACA TCAGGTATGA CCAGACATTA TTTGCTGTGC ATTACTAGTA TATTGTTCAC
AACGTTGAAC AAGGGGAAAG TCAAATCTCA TAATTCAAAT AAGACCCGTG TATGCTGCTG TGAACTTCAT CATTATCAAA
ACAAGACAAA ATGAAGTACA GAAGGTTGAG AATGAAGTGT GAATAAATTT GTTAAAATCC TGGATTAAAA ATTCGACATA
TCTAAATAGT AGCACATCAG GAGCTTAAAT TATTTTCACT TGCTTTTTTG GATTTTACCT CTATTTTTCC CTTTGGAAAA
TTCCCAGTAT GATGTATAAT ATTTCTACCT GCTTCATATG TTAACCTTTT CTGATTGCTC AATCCATGAG AAGGATGTCA
CAAGTTTAGT ATTCTAGTTT TATCCATTCC GACAATATGG AAGTAATACT AGTTTTCTCA AATGGAAAGA CAAAAAGGAT
TACATAGACA ATAAAGCTAA TGATGTATTT TATGTCTCAT CTCTGTCAAC ATTTATATGC TTTAAACTTT CATGGTACAT
GTGTATCTAT AATATATTTA AAGGAAGAAT TATGACCCAC TCATATCTGT ATTCTTGACA AGTTATAAAT GATTGTTGAT
ACCAATATAC TTGTTGCAAA CTATTTTGTG ATAGTTTTGA AATATTTTCT GCTTTACAAC AAACATTGCA GTGCATATTC
TATCTTCAAT GAAGACTTCA GAGAGCTTCC AGGGACGCTT AACGCAGATC GGCTTGATAG AGATATAAGA GCAGGACAAT
TTTGAGCCTT GCCGCACTCT TTTCAATCTC CCCGACATTG ATGTCAAGTC ACATGATGTA TATCTGCAGA ATCACAAGGA
GATAATTGAC TATCCAAAGA GTTAACAAGT ACAGTACCAA TGAAAATGAC AAAGTTTTCC ATTAGACCTG CGCCCCTTCT
GTGTATATAT CATGTACGAT GTACTGATAC GATTGAGATG AACGTTTCAT TGTGGATTAT TGGGTCTATG TCTCTGCTAC
CGAGGCTCCT GTTTATGAAT TTCAGAGTTC ACACTTTTGG TGCAGCGCCC ACCTTTGGGC CATATATGCA GAGATTTGTC
AGGAATCAAA AATTGAGAGT GGTATTTTAA TACTGTTAAG ACTATAGCTT TGATCTTTTT TGTTAATCTA CAACTTTAGT
TAATCTGTAA TTTTTTAACT CAAAGTAAAA GTTTTGTTAA GAACTGCTGA 

>Vigan.01G366200.01
TTTATGAATC TCTTTTAGAA TGAATTAATT AATGGGTCTA AATTAGCTTT AATGGAATTA AAATGAATTT GATTCAAAAG
CATATTTTAA TTAATTGGTA TTGATGATGG TAGAGTGGTA CGTGGTTTGA TTCAGAGATG GGCATGGAGG AACAAGACTC
GGAGAAGAAG GTGGAGATCG TCCTCAAAAC TATTGGTCCT GCACGCCCCT CTCGCCTCCT ACTTCCTTCT TCCATCAAGG
TGCGTGATTT GAGGAGGTTA GTTGCTGAGA ATGTTAATTT ACCAATTGAG AACTTGAGTC TTATTCTGCG TGGATGTGCT
TTGTGTGACA TGAAAAATGG AGATGAATTA TCTGTACAAC TCAATGATGG AGATAGCTTG ATTGTTGCTG TCAAACCAAA
GCCACCCGTG AAGGATGAAT ATGACAATGA TGATGATGAT GAAGATCTGA AGTTTCGGCT TCCTCACTCA TCAAGTCGGT
GGAAGAAGTG GCTTTACACT TTTCTACACG ATAACTTGAA GCTTCCAGAT GTTGTTTTGA TGGTAATTTT CACTCTGAGT
CTGAAGGCGT GGCTTCTCAT AACTTTGTGG TTTATCCTTG CTCCTGTCGC CCACAGATGG GATCTCGGAC CTTTGTATAT
ACTTGCAACT GGCTTTTGTC TCATTCTCTT CAACCTTGGA AAGCGCCAAG CTGGTGACAT CAGTGCATAT TCTATCTTCA
ATGAAGACTT CAGAGAGCTT CCAGGGACGC TTAACGCAGA TCGGCTTGAT AGAGATATAA GAGCAGGACA ATTTTGAGCC
TTGCCGCACT CTTTTCAATC TCCCCGACAT TGATGTCAAG TCACATGATG TATATCTGCA GAATCACAAG GAGATAATTG
ACTATCCAAA GAGTTAACAA GTACAGTACC AATGAAAATG ACAAAGTTTT CCATTAGACC TGCGCCCCTT CTGTGTATAT
ATCATGTACG ATGTACTGAT ACGATTGAGA TGAACGTTTC ATTGTGGATT ATTGGGTCTA TGTCTCTGCT ACCGAGGCTC
CTGTTTATGA ATTTCAGAGT TCACACTTTT GGTGCAGCGC CCACCTTTGG GCCATATATG CAGAGATTTG TCAGGAATCA
AAAATTGAGA GTGGTATTTT AATACTGTTA AGACTATAGC TTTGATCTTT TTTGTTAATC TACAACTTTA GTTAATCTGT
AATTTTTTAA CTCAAAGTAA AAGTTTTGTT AAGAACTGCT GA

>Vigan.01G366200.01
ATGGGCATGG AGGAACAAGA CTCGGAGAAG AAGGTGGAGA TCGTCCTCAA AACTATTGGT CCTGCACGCC CCTCTCGCCT
CCTACTTCCT TCTTCCATCA AGGTGCGTGA TTTGAGGAGG TTAGTTGCTG AGAATGTTAA TTTACCAATT GAGAACTTGA
GTCTTATTCT GCGTGGATGT GCTTTGTGTG ACATGAAAAA TGGAGATGAA TTATCTGTAC AACTCAATGA TGGAGATAGC
TTGATTGTTG CTGTCAAACC AAAGCCACCC GTGAAGGATG AATATGACAA TGATGATGAT GATGAAGATC TGAAGTTTCG
GCTTCCTCAC TCATCAAGTC GGTGGAAGAA GTGGCTTTAC ACTTTTCTAC ACGATAACTT GAAGCTTCCA GATGTTGTTT
TGATGGTAAT TTTCACTCTG AGTCTGAAGG CGTGGCTTCT CATAACTTTG TGGTTTATCC TTGCTCCTGT CGCCCACAGA
TGGGATCTCG GACCTTTGTA TATACTTGCA ACTGGCTTTT GTCTCATTCT CTTCAACCTT GGAAAGCGCC AAGCTGGTGA
CATCAGTGCA TATTCTATCT TCAATGAAGA CTTCAGAGAG CTTCCAGGGA CGCTTAACGC AGATCGGCTT GATAGAGATA
TAAGAGCAGG ACAATTTTGA 

>Vigan.01G366200.01
MGMEEQDSEK KVEIVLKTIG PARPSRLLLP SSIKVRDLRR LVAENVNLPI ENLSLILRGC ALCDMKNGDE LSVQLNDGDS
LIVAVKPKPP VKDEYDNDDD DEDLKFRLPH SSSRWKKWLY TFLHDNLKLP DVVLMVIFTL SLKAWLLITL WFILAPVAHR
WDLGPLYILA TGFCLILFNL GKRQAGDISA YSIFNEDFRE LPGTLNADRL DRDIRAGQF*