GBrowse Details

Vigan.01G363400.01

Basic Information:
Name: Vigan.01G363400.01
Multiple alignment
Variant Information
Position: Chr01:49888809..49892220 (- strand)
Length: 3412
Functional Information:
Description: Similar to cytochrome c oxidase subunit 6a, mitochondrial-like. [XP_004509040.1, Cicer arietinum]
GO: Cellular Component: mitochondrial inner membrane (GO:0005743)
Cellular Component: mitochondrial respiratory chain complex IV (GO:0005751)
Molecular Function: cytochrome-c oxidase activity (GO:0004129)
InterPro: Cytochrome c oxidase, subunit VIa (IPR001349)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:134.16,74.43,135.88,95.46,253.15,212 .80,162.86,95.30
Arabidopsis thaliana homolog: AT4G37830.1
Automatic updates:
Name: NM_001250011 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527245 (LOC100527245), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:49888809..49889320 (- strand)
Length: 512
Type: three_prime_UTR
Position: Chr01:49889321..49889358 (- strand)
Length: 38
Type: CDS
Position: Chr01:49891082..49891124 (- strand)
Length: 43
Type: CDS
Position: Chr01:49891273..49891379 (- strand)
Length: 107
Type: CDS
Position: Chr01:49892059..49892173 (- strand)
Length: 115
Type: CDS
Position: Chr01:49892174..49892220 (- strand)
Length: 47
Type: five_prime_UTR

>Vigan.01G363400.01 class=Sequence position=Chr01:49888809..49892220 (- strand)
CCCCTTCAAA GCTAAAACAG AAAAAAGAAA GAGTCAAACG GCGAGCAATG GCGACATCGC TTGTTCGATC GGGTTTTCTT
CGAACAGCCC TACGTGGAGG CGCTCGCGGC TCCCAGGTTC CCAAGAGAAA CTTTTCTTCC GCTGGTCATC ACGATGATGC
TTGTAAGTAC CTTATCATCT CTCTCTTCTC TAACCCTATT TATTTTAGGG TTTTAATAAT TAGATCTGCT GCAATAGTTT
TGTTTCGCGG GAGCGTGTCG TGCATTAGGT CAATTTACGT GTGGAAAGGG TTTGTGTATT GATGAGATTA GTCCAGTTCC
ATTTTATTCG AGATTAAAAG AATTATGCGC TCCGTTTTTT TTTTTACTTT TAATTTGAAC TGCGGGCGGT CGATTTCTTT
TTGTGCTGAA ATCGATTTGT AATTTCTATT TTTTGTCCAC TGAAATGGAT TTGTGCATTC ATTTCGACTC TAAGTTTGAA
CATTTTTTTG CTTATGTTCG AAATGATAAT AAATGAATAA ATCGAGTTTT CAATTATCTC GATTTCAAAC GTTTCGAATC
CGATAACGGG GTTGCGTTTA AATTTCTGGA TGTAGACTCA TTGGGTTTGT ATTTATAGAT AGCAACATTT TTCCGATTAA
ATGAGCAAAG TAATATTAGG TTTTTTGTGT CTTACTTCAT CACTGTAATA TTGACCTTTC TGTTAAGAAT TTAATGTATC
TTTTGTTTCA GGGTGAGATT GATAGATTTT CTCTACCTCA CCTATATTGC ACTTTGCATG TTTTATTTCA AACATTTGTT
TTATATTTTT TTAATTATTT CTCTTCTCAT TTTTCTCTCA GACGAGACGG CCAAATGGGA AAAGATTACA TATCTAGGCA
TTGTCAGTTG CACTGCTTTG GCCATTTATA ATCTATCAAA GGGCCACCCA CACACAGAAG AACCTCCTGT GAGCTTTTGT
TTATACACAT CTGCAGTTGT TTATGATTGT TACTTTGTAT TTTGCTGTCT ATCATTTCCC CATCTCCCGT GCATGTTCAA
GTATGTTCAT TTTGTATTAT TAAAACAAAA GTTTAATGTT TTACTTTTCT GCGCAGGCTT ACCCATATTT ACATATCCGC
AATAAGGAAT TCCCATGGGG TATGTCTTCA ATTTTATGCT TTCATATCTA TGATATGGAG CTTTCTTTAG AATTAGTAAT
TATTTCTCAA ATATTTGAAT TGTTTTGAAT TTTCCCTCCG TTCCTTTAGT GATGGAAAAT CTTGTTGGCT ATGGACTTTT
TTATTTTTGT TAATAATAGT GTAACTGTTT ACATGACTAT TTTTCATTTT TATTTAGTGA ATGGAAGCCT TCTTTTGTTG
GTTAGTATAC TGGACTTGGT TTCTAATGGA TGGGTAGGGA GGCTGGGTTG TGGCTGTTTT GGGTTTATTA TTCACATTTT
ATTATTTGTG GGCTCTTTCA GTCACAGTTT TTATGCATAC ATTGGATCCA ATTATCAAAA TTTCAAGTTG AACTTTTAAT
TATTTCTCAA ATATTTGAAT TGTTTTGAAT TTTCCCTCTG TTCCTTTAGT GATGGAAAAT CTTGTTGGCT ATAGACTTTT
TTATTTTTGT TAATAATAGT GTAACTGTTT ACATGACTAT TTTTCATTTT TATTTAGTGA ATGGAAGCCT TCTTTTGTTG
GTTAGTATAC TGGACTTGGT TTCTAATGGA TGGGTAGGGA GGCTGGGTTG TGGCTGTTTT GGGTTTATTA TTCACATTTT
ATTATTTGTG GGCTCTTTCA GTCACAGTTT TTATGCATAC ATTGGATCCA ATTATCAAAA TTTCAAGTTG AACATGTAAT
GCCGTTTTTA AGTCGAAGAT CTGGTGTAAA TGATCTTTTT TTTGCTGCTT TTGCTTTTTA CATGTTTGTT TGCATGGGAC
CTACCGAGGC TCATGGCCTC CAATATAAGG ATTGAGAACC CAGCAGTAAT TTTCTTTTTT CATAAGCATG GCACGTTCTT
GTCACGACTC CTTCCTGTTT CTGTATCTCT GTCGATGAAG TGATACACAT GGGCAAAAAC CTCACAAAGC AATAAACGAG
TGTATGAAAA GGGACTCATT TATTGCTTTG GAGCGTCTGC CACAGTGCTT TAATTTAGAG GTGCACAAGT GTTAGGTCAC
ACTGTGGCGC ATCGTTTTCT TTTATTTTTG CAATTTAAAT CATTATCGTT GCCAATGATT TGATGTAAAG AAATTTTCAA
TATAGATCCC AGAAGTTACC TCACATCCGC CCCAGACTGC CCCCCCCACA TACACACACA GACACCATAT TGTCATTGAT
AACACACTAC TCAGCTCTTT CAACACTATT CATAAGTTAT TTTAAGGGTG CTGAAGTTGC TCTTATACCC AATTTTATTA
TCACAATTTG CCTGTAGAGG TGGTTGTTTA TTCTTATAGT TCTGTTTGAA CAGGTTTCTT TACCAAACCT TTTAGAAAAT
AGTAAGCAAA AAAAATGAAA TACGTTTTTC TTAGAAGGTA AAATTTAAGT AATGGTTAAA CTAATATTTT GGAGAAGCTA
AAATCATTTA GCTTTCCAAA AAGTTGATTA TAACGAACAA ATAAACTAAT TTTAGCTTAT AAAAAAAGTT TATATAATTT
TTTCTTTTCA TATTTTTAGT AATTATGGGG AAACTTGTCT AGATATATGA ATTATATACA ATATAGGTTA CTGTTTGCTT
CTGCATTAGT AGCTGATTTC TTGTGTATTT GTATCCCTTG TCTGCTGTTA GTAATCCAAT GCTACTGTGT CTGCCTTTGT
CTTCAAAATA TTGTTGGACT GAGATTTCAG GTTGTACGAC ATGTTTCTTT TATGATAAGC AGGTCCCGAT GGGCTATTCG
AAACTAAGGA CCACCACTAA GAGAGTATTA GTGGTTTAAT GAAGCTGTTT GTGGCACCGG GGCATTTCTT TCGTCAATGT
TCAAGAAAGT GATTGACTAT TGCGGTTTTT GAAATGTGAT CTACAACTTG CACTTGACAA CATTTGTTTG CCATGTTTTT
ATCTTGTGTT CTTTTTTTTA TGGTTGTAAC AAAATAAAAT TGCCAAACAA AATTATGTTT CTTTTCATGT CGATTCTTGG
TTCAATAAAT TTTGAAAGAA ATCGATCGTG AGGCCGCAGG TTTATATTAT ATTATGTTAT CTCCTTAGCT GTTTTCTGGT
CGATCTTAGC TTTTGTTTTG ATTTTTGAAG AGGCAACCCA TGTTTGTGGA TGGAAAAGTT CCAAATTATA AAAATGTTAA
TTGCTGTATA TATTTTACAG AATTTTTAAC CGCTGGATGT GGGAATAAAT GTTTATGGTT CTATGTTGTT GATGACTAAT
TAGGCAGTTT CCTTAAAGAT AATATGTATT TGAAGTGGGT AAGTGATGGT GT

>Vigan.01G363400.01
CCCCTTCAAA GCTAAAACAG AAAAAAGAAA GAGTCAAACG GCGAGCAATG GCGACATCGC TTGTTCGATC GGGTTTTCTT
CGAACAGCCC TACGTGGAGG CGCTCGCGGC TCCCAGGTTC CCAAGAGAAA CTTTTCTTCC GCTGGTCATC ACGATGATGC
TTACGAGACG GCCAAATGGG AAAAGATTAC ATATCTAGGC ATTGTCAGTT GCACTGCTTT GGCCATTTAT AATCTATCAA
AGGGCCACCC ACACACAGAA GAACCTCCTG CTTACCCATA TTTACATATC CGCAATAAGG AATTCCCATG GGGTCCCGAT
GGGCTATTCG AAACTAAGGA CCACCACTAA GAGAGTATTA GTGGTTTAAT GAAGCTGTTT GTGGCACCGG GGCATTTCTT
TCGTCAATGT TCAAGAAAGT GATTGACTAT TGCGGTTTTT GAAATGTGAT CTACAACTTG CACTTGACAA CATTTGTTTG
CCATGTTTTT ATCTTGTGTT CTTTTTTTTA TGGTTGTAAC AAAATAAAAT TGCCAAACAA AATTATGTTT CTTTTCATGT
CGATTCTTGG TTCAATAAAT TTTGAAAGAA ATCGATCGTG AGGCCGCAGG TTTATATTAT ATTATGTTAT CTCCTTAGCT
GTTTTCTGGT CGATCTTAGC TTTTGTTTTG ATTTTTGAAG AGGCAACCCA TGTTTGTGGA TGGAAAAGTT CCAAATTATA
AAAATGTTAA TTGCTGTATA TATTTTACAG AATTTTTAAC CGCTGGATGT GGGAATAAAT GTTTATGGTT CTATGTTGTT
GATGACTAAT TAGGCAGTTT CCTTAAAGAT AATATGTATT TGAAGTGGGT AAGTGATGGT GT

>Vigan.01G363400.01
ATGGCGACAT CGCTTGTTCG ATCGGGTTTT CTTCGAACAG CCCTACGTGG AGGCGCTCGC GGCTCCCAGG TTCCCAAGAG
AAACTTTTCT TCCGCTGGTC ATCACGATGA TGCTTACGAG ACGGCCAAAT GGGAAAAGAT TACATATCTA GGCATTGTCA
GTTGCACTGC TTTGGCCATT TATAATCTAT CAAAGGGCCA CCCACACACA GAAGAACCTC CTGCTTACCC ATATTTACAT
ATCCGCAATA AGGAATTCCC ATGGGGTCCC GATGGGCTAT TCGAAACTAA GGACCACCAC TAA

>Vigan.01G363400.01
MATSLVRSGF LRTALRGGAR GSQVPKRNFS SAGHHDDAYE TAKWEKITYL GIVSCTALAI YNLSKGHPHT EEPPAYPYLH
IRNKEFPWGP DGLFETKDHH *