GBrowse Details

Vigan.01G359400.01

Basic Information:
Name: Vigan.01G359400.01
Multiple alignment
Variant Information
Position: Chr01:49413793..49417048 (+ strand)
Length: 3256
Functional Information:
Description: Similar to ADP-ribosylation factor-like protein 8A-like. [XP_004511831.1, Cicer arietinum]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.33,0.95,19.43,38.87,21.69,22.97,38 .67,35.77
Arabidopsis thaliana homolog: AT3G49870.1
Automatic updates:
Name: NM_001248492 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526879 (LOC100526879), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248492 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor-like protein 8a (LOC100526879), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:49413793..49414118 (+ strand)
Length: 326
Type: five_prime_UTR
Position: Chr01:49414119..49414156 (+ strand)
Length: 38
Type: CDS
Position: Chr01:49414842..49414923 (+ strand)
Length: 82
Type: CDS
Position: Chr01:49415015..49415047 (+ strand)
Length: 33
Type: CDS
Position: Chr01:49415167..49415288 (+ strand)
Length: 122
Type: CDS
Position: Chr01:49416163..49416324 (+ strand)
Length: 162
Type: CDS
Position: Chr01:49416488..49416605 (+ strand)
Length: 118
Type: CDS
Position: Chr01:49416606..49417048 (+ strand)
Length: 443
Type: three_prime_UTR

>Vigan.01G359400.01 class=Sequence position=Chr01:49413793..49417048 (+ strand)
TTGTATGTCA CGCGCTTCAC AATGAGGATG GGTTAAGTAA TGTCACGACA GGTTCAGATT GTGTAAATAA ACTTTAATCG
CGAGATATGA TCCCCTGCAT CGCCACAATA TTGATCGAGA AGCGCTTCAT TTGTCTCTTC TGTGTGGGAC CCGCGCGATT
CAAAACCCCA AAGCAATAAG CTCTGTTTAG AAAAATAAAA AGCAATTTCC ATTATGCGAA TGCGATAAAC AGTGTTGAAG
GATCTGTGTG GGGGTTCGAG TTGGAACAAC GGAATCGAGA TCCGTGTGTT TGTTTGTGTA GCTTTCTTTA CCAGTGAAGA
GAAGCGATGG GGTTGTGGGA ATCTTTTCTC AATTGGCTTC GCAGGTTAGT TAGCTTTTTC TACTCCAACA AATTATCACA
ATGCAGTTGT TCTTTATTTA TTTATATATC GGTTTAAACT CAGAATTAAT TGATTGTTGT GATAAATGAT TGTGAATTCG
TTTCATGTTT TAGTGTAATC ATGTATAGGA CTTTCTAAGA TGTTCACTGC CCGCAAAATA TTTTCTCTGT ATTATTGGTG
ATAATTATAG TCATGCGATT TTTGTGTAAT TAGATATGTA TGAGCAAATC CAATTTTGCT CTTTCTTTTC TTTCTTGGTG
GTGTTTCAAG ATTTTTTAAA AGGAAGCATA AATGGAATCT TGTATATAAC TTGATTTGGA TTATATCAGT TTAAGAACTC
AATTCGTTTA AAAAAATGTT GTCTAACGAT TGGAAAATCA TTTCAATCTA AATGAATTCT AGTGAATTGC GAAGTTAAAG
TGTTCCCAAA CGACAGTAGC TGCTGCTCGG CTTAGGTAAT CTGTAAACTT TTGAACAAGT GTTTGCTGAA ATTTAGGAAC
AGCTATTGTT TGTACTAAAT CTAATTCTAT TTTTGTGACA CAATTTTTAT GGAGTGTTAG GTTGCACCTA AGTTGAATTT
CGGTATGTAC TTTTTATACG GATGCTTGGT CTGGGCTTAG TGGATTACTT TATTCAAAGT AGCTTAACGC ATTGTAAATT
TGGTTGCAGC CTCTTTTTCA AGCAGGAAAT GGAATTATCT TTGATTGGAC TTCAGAATGC TGGGAAGACT TCACTTGTAA
ATGTTATTGC TGTAAGTATG ATAATTTTTT TGGATTTATC TTAGTAATTT GTCATTATTT GAACTGATTC ACTGAAAGAT
ATTTTTTTTA TCTTCTTCCT AGACGGGTGG GTATAGCGAG GACATGATTC CTACTGTAAG TGTTATTTAC CAAATGCTTT
CGGTTATAGC TTTCTCCTTG AGTTACTATA TGAAGATTTC TGCTTATCAA GCAACATGAT ATTCAGATCA GTCTATTTTG
TCATCGGATT CCAGGTGGGA TTCAATATGA GGAAAGTAAC AAAAGGCAAT GTTACAATAA AGTTATGGGA TCTTGGAGGG
CAACCTAGGT TCCGCAGCAT GTGGGAACGC TACTGTCGTG CAGTTTCTGC TATTGTGTAT GGAGCAAACT TCTCATTTCC
TTTTGATTAA AAAATTCTCT CTCTATCTCC CTCTTAGCAC GGGTACATTC AGTGAGACAG ACATCATTGA TAATCTTCTA
GCGTACATTT GTACTTTTGC ATTGGTAATC TGTCAATATA TGCATGGTAA TTCCATAATA GAGTTGTTCA TCAACTTACA
CAATTGTTTG TTTTTGTTTT CCTAGCTGTT TCATTATGGT AAATTTTATC CTTTTTAGGA CTGAAGATCA AGTTATCATT
TTACCTCCAT GAGCTCAAAC TCATTTTTAA TTAGTGAACT TGATGCAAAC TCACTTATCA GTTAGATGCC CATGTCAACA
GCTCTTGCCT TGGTTTAATA TTATATTTTA TCTGTACTGT ACCCGAAAAA AAAAACGAAG AAGTGCAGAG GGATCTGTTT
GTCTGTATTA ATTGATTTTA CCAATGACTC TTTAAGTCGT GTCACGATAA AGATTATTTA CTAGTTAATA TCGCTTATCA
CGGTTAGTGC AGTTTGTAAG GCGAGGAAGT GAGCATAGCT CTTTGAAACT TTATCCTGTA TGACCGGATT GTTCTTCAGT
GAATGAGTTA TATGATTTCA CTAGTTAAAT CTTTCACCTT CTGTGTTTTA TTGCTTCCAG TTCTAAAAGA CCTGGTTTCC
TAGTTATTCC GAAGTTATGA TGCTGCTGAA TAATGTCCCT CTTCGATCTT CCATAGATGT GTGATTGGAT CATGCTGTTG
TTGCCAATCT TTCTCTAAGT TGATGCATTT TCCTCTCCTG CATTAACATT AGTGTAGGAG TCCAATGTTA TCTTGATCTA
TTAATTAACG GATTTTGGTT ATAGTTCCCC TAATATGATG TTTCCTGCAG TTATGTTGTT GATGCTGCAG ATCAAGATAA
CCTTAGCATA TCAAAGAGTG AACTACATGA TTTATTGAGT AAGCCATCAT TGAATGGTAT TCCTTTGTTG GTATTGGGGA
ACAAGATCGA CAAGCCAGGG GCTCTGTCTA AAGAAGCTTT GACTGACCAA ATGTAAGTTG TCACTTTTAT TCTAATTTGT
AGCAATAACG AAAGTAAACT AGTACTAGAA GTTACTTTAC TGAATTGATT TGAGTTATTA CGTGTTTTCC TGTTTCTTTT
TTTTTCTTCT TACTTTTATA TTGCTTGGGT GCTAAAAGAG CTATCTGGTA TACAGGGATC TGAAGTCAAT TACTGATAGA
GAAGTTTGCT GCTTCATGAT CTCGTGCAAA AACTCGACTA ACATTGACTC TGTTATCGAT TGGCTTGTAA AGCACTCCAA
ATCAAAGAGC TAAGAGGTTT GTTAATGTTT TGTACTCTAC TGTAATTTCA ATGAAATATA TCTGTAAGTT GCTGAAGGCG
TCTGCATGCC TAACTTTGTT GCAGATATTT TATTCCTGCC CTCTTCTCAT TTGCTTCTTA ATGTAATATC AAGTCCAATG
GGGTATCAAA CCACAAGATG AAATGTCAAG GTTTGTTTTA TGAGTGAATC ATATTGTCAT TGTCAGCTTA GTTGCATTTT
TATAATACTT TTCAGAACTG CAGTTGTGAG AGGAATTGGT TGTCTATCTC TGTAAATTAG ATTAGATTTT TCTAATGGTC
AGCATTGTGT GGGTCTTGTT ATTTCCTGGG GTGTGTCAAA TACAAATAAA TTTGAGTGGA TTCTTTTTGT CATTTTATCG
TGTTTGAAGT TTTTTATTCT TGCTTTCTAC AACAATTCCA GCAAAACCGA AAAAGA

>Vigan.01G359400.01
TTGTATGTCA CGCGCTTCAC AATGAGGATG GGTTAAGTAA TGTCACGACA GGTTCAGATT GTGTAAATAA ACTTTAATCG
CGAGATATGA TCCCCTGCAT CGCCACAATA TTGATCGAGA AGCGCTTCAT TTGTCTCTTC TGTGTGGGAC CCGCGCGATT
CAAAACCCCA AAGCAATAAG CTCTGTTTAG AAAAATAAAA AGCAATTTCC ATTATGCGAA TGCGATAAAC AGTGTTGAAG
GATCTGTGTG GGGGTTCGAG TTGGAACAAC GGAATCGAGA TCCGTGTGTT TGTTTGTGTA GCTTTCTTTA CCAGTGAAGA
GAAGCGATGG GGTTGTGGGA ATCTTTTCTC AATTGGCTTC GCAGCCTCTT TTTCAAGCAG GAAATGGAAT TATCTTTGAT
TGGACTTCAG AATGCTGGGA AGACTTCACT TGTAAATGTT ATTGCTACGG GTGGGTATAG CGAGGACATG ATTCCTACTG
TGGGATTCAA TATGAGGAAA GTAACAAAAG GCAATGTTAC AATAAAGTTA TGGGATCTTG GAGGGCAACC TAGGTTCCGC
AGCATGTGGG AACGCTACTG TCGTGCAGTT TCTGCTATTG TTTATGTTGT TGATGCTGCA GATCAAGATA ACCTTAGCAT
ATCAAAGAGT GAACTACATG ATTTATTGAG TAAGCCATCA TTGAATGGTA TTCCTTTGTT GGTATTGGGG AACAAGATCG
ACAAGCCAGG GGCTCTGTCT AAAGAAGCTT TGACTGACCA AATGGATCTG AAGTCAATTA CTGATAGAGA AGTTTGCTGC
TTCATGATCT CGTGCAAAAA CTCGACTAAC ATTGACTCTG TTATCGATTG GCTTGTAAAG CACTCCAAAT CAAAGAGCTA
AGAGGTTTGT TAATGTTTTG TACTCTACTG TAATTTCAAT GAAATATATC TGTAAGTTGC TGAAGGCGTC TGCATGCCTA
ACTTTGTTGC AGATATTTTA TTCCTGCCCT CTTCTCATTT GCTTCTTAAT GTAATATCAA GTCCAATGGG GTATCAAACC
ACAAGATGAA ATGTCAAGGT TTGTTTTATG AGTGAATCAT ATTGTCATTG TCAGCTTAGT TGCATTTTTA TAATACTTTT
CAGAACTGCA GTTGTGAGAG GAATTGGTTG TCTATCTCTG TAAATTAGAT TAGATTTTTC TAATGGTCAG CATTGTGTGG
GTCTTGTTAT TTCCTGGGGT GTGTCAAATA CAAATAAATT TGAGTGGATT CTTTTTGTCA TTTTATCGTG TTTGAAGTTT
TTTATTCTTG CTTTCTACAA CAATTCCAGC AAAACCGAAA AAGA

>Vigan.01G359400.01
ATGGGGTTGT GGGAATCTTT TCTCAATTGG CTTCGCAGCC TCTTTTTCAA GCAGGAAATG GAATTATCTT TGATTGGACT
TCAGAATGCT GGGAAGACTT CACTTGTAAA TGTTATTGCT ACGGGTGGGT ATAGCGAGGA CATGATTCCT ACTGTGGGAT
TCAATATGAG GAAAGTAACA AAAGGCAATG TTACAATAAA GTTATGGGAT CTTGGAGGGC AACCTAGGTT CCGCAGCATG
TGGGAACGCT ACTGTCGTGC AGTTTCTGCT ATTGTTTATG TTGTTGATGC TGCAGATCAA GATAACCTTA GCATATCAAA
GAGTGAACTA CATGATTTAT TGAGTAAGCC ATCATTGAAT GGTATTCCTT TGTTGGTATT GGGGAACAAG ATCGACAAGC
CAGGGGCTCT GTCTAAAGAA GCTTTGACTG ACCAAATGGA TCTGAAGTCA ATTACTGATA GAGAAGTTTG CTGCTTCATG
ATCTCGTGCA AAAACTCGAC TAACATTGAC TCTGTTATCG ATTGGCTTGT AAAGCACTCC AAATCAAAGA GCTAA

>Vigan.01G359400.01
MGLWESFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM
WERYCRAVSA IVYVVDAADQ DNLSISKSEL HDLLSKPSLN GIPLLVLGNK IDKPGALSKE ALTDQMDLKS ITDREVCCFM
ISCKNSTNID SVIDWLVKHS KSKS*