GBrowse Details

Vigan.01G283700.01

Basic Information:
Name: Vigan.01G283700.01
Multiple alignment
Variant Information
Position: Chr01:40400131..40404709 (- strand)
Length: 4579
Functional Information:
Description: Similar to Acyl-[acyl-carrier-protein] desaturase. [V7CH04, Phaseolus vulgaris]
GO: Biological Process: fatty acid metabolic process (GO:0006631)
Biological Process: fatty acid biosynthetic process (GO:0006633)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300)
InterPro: Fatty acid desaturase, type 2 (IPR005067)
Stearoyl-ACP desaturase, conserved site (IPR005803)
Ferritin-like superfamily (IPR009078)
Ribonucleotide reductase-related (IPR012348)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.74,14.41,27.99,57.24,34.89,48.78, 23.80,31.44
Arabidopsis thaliana homolog: AT2G43710.2, AT3G02610.1, AT3G02620.1, AT3G02630.1, AT5G16230.1, AT5G16240.1
Automatic updates:
Name: KX881934 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max isolate WT stearoyl-acyl carrier protein desaturase (SACPD) mRNA, SACPD-A allele, complete cds; chloroplast.
PubMed ID: -
Status: Known Variant
Name: KX881935 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max isolate D227G(F1396) stearoyl-acyl carrier protein desaturase (SACPD) mRNA, SACPD-A allele, complete cds; chloroplast.
PubMed ID: -
Status: Known Variant
Name: NM_001251615 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stearoyl-ACP desaturase 2 (SAD2), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:40400131..40401273 (- strand)
Length: 1143
Type: three_prime_UTR
Position: Chr01:40401274..40401834 (- strand)
Length: 561
Type: CDS
Position: Chr01:40402448..40402952 (- strand)
Length: 505
Type: CDS
Position: Chr01:40404412..40404521 (- strand)
Length: 110
Type: CDS
Position: Chr01:40404522..40404709 (- strand)
Length: 188
Type: five_prime_UTR

>Vigan.01G283700.01 class=Sequence position=Chr01:40400131..40404709 (- strand)
GCCTAAACCA TCCATTAAGT GGTTCCCTTC TTTCCCTTTC ACTCGCTGCT CTCCTCCTTT GCTGCCTCAC ATCACTCTTC
TTCTTGGCTT GCTTTCTTTC ATTCTTTCTT CTCATACAAT TTCTAATTCG TTTGTCGAAA TCTCTTTCAC TCTCATCGTC
TTCCAATCAG GAAACATAAG AACCAAGAAT GGCTCTCAGA CTGAATCCTC TGCCAACCCA AACCTTCGCC CTTCCTCAGA
TGGCTAGTCT CAGATCTCCC AAGTTCCGCA TGGCTTCCAC CCTCCGCTCT GGTTCCAAGT CAGTTCTATC TCTCTCAGAT
CTTCTTCTCT TAACTCAATT CATGCATTTC TCCTTTTTTT TTCACTTCCT TCATTTTTCA CTCTTTCCCT TTTCTTCTGT
TTTTTCCATC TCTCTAATGT CTCAAACCAA ACCTAACAAC TTTGAAAACC ACGCTCTATT CTTAATGCTT TGTTTTGTTT
TTTTAGTTTG TTTGTTTTCG AATTCACTTT TTTATTTTCT CCATCAACTA TTCTTCGCAC AAAATGTTAT TCCACATGTT
TGTTTTTCGC AATCTGATGG ATGAGGTGGA GTGGTTCAAT TTCATACAAT ACACACTGTT GGGTTTTTTC TTATTTTTCG
TGTTCGGTGT GCGCCCTTTT TTTTTTTCTC GGGGTTGGTG GGGATTGGTA AGGGATTGTT TCAGTCTACC ACAAAGACTA
CTTGTGTTTT GTGAGTTCGA TTCTGTTGTT TTCTCGTATT CAGGTTCTCG TCTTCAACCT ATTTACATTT ATGTTTTAAG
GTTCTCGTTT TCAACCTATT TACATTTATG TTTTACTTTC ACTGTGGGAA ATTGTTGTTT AGTGATGGCA GTACTTATTA
CTTAATTTTT GTTTTCTTTC ATTGTTGGGT TTTTTTTTTC TTCAGTTTCG AGTTGAGTGC CTTTAAAACT AAGGATTTTG
ATGCTTGCTG CGTCATTGTT ATCTTCTGCT TGATTTCATT TGTGGTCTCT GCTTTTTAGC CTATATTTCG GATGTTACTT
TGATGATTGT TGCCAACTTT TCACTGATTA TGATTATCTT GATGTGGATG AATTAAAAAG AGTGGTAACA GTTCCGACTT
GTTAATGGCT TTTTTTGCTG GTTGTTTGGG GTTTTTGGAT GGAAATTTGA ATAACACATG TATGCGCGTT TGGTGAAACT
GTCCATTTGT GACTTTGATA GGTGTTTGTG TAGATCGCTA AACATTGTGA GCCGTGCACA TGCTAGGAAT GAATACTAAT
TGGGTATGCT CAGGTACCTA ACAGGTGGTG TATTATCTTT TTATACAAAA AAAATGGGTG TCCAATGCTG CTACTGCAGC
GATGTGATCA TATGACTAGA TTTATCTCGA TATCAACTGG TCCTACTTTA TTTTCCAAAA ATGACACTAT TTCTCCTAAT
TGAAGTGACA ATTTCCCCAC CATTCATCCT TACTCCAGAC CTGTTAGTGT CTCCAGTTTG TTTCATAGAC ATGGACATCT
ATCTTGCTGC ATTGAAACTG ATTTACTGTT TGTTTGCAAA CTGCCCATTA TGTAAAATAG TCATTTTTAT TCTTTTGGAT
ATTGGTGTTC ATGAAATGGT ATAGGTCTGT ATCTGTGGGG ATTGTATGAT TGTTGTTGCT ATTAACGGTA CTGTTCACTC
TGTAGATCAA ATTTACCAGC ATGATCATTT GAGAAGTTGC TGTATTATTT CTCTAAAAGT CATTTGAATT TTTGTAGAGA
GGTTGAAAAT ATTAAGAAGC CTTTCACGCC TCCGAGAGAA GTGCATGTTC AAGTGACCCA TTCTATGCCT CCCCAGAAGA
TTGAGATTTT CAAATCGTTG GAGGATTGGG CTGAGCAGAA CGTCTTGACT CTCCTTAAAC CTGTAGAAAA ATGTTGGCAA
CCACAGGATT TTTTACCAGA TCCTTCTGCA GATGGATTTG ACGAGCAGGT GAGAGAACTG AGAGAGAGAG CAAAGGAGCT
TCCTGATGAT TACTTTGTTG TTCTGGTTGG AGACATGATC ACGGAGGAAG CCCTTCCTAC TTATCAAACA ATGTTAAATA
CATTGGATGG AGTTCGTGAT GAAACAGGCG CTAGCCTTAC TTCCTGGGCA GTTTGGACTA GGGCATGGAC TGCTGAAGAA
AATAGACACG GTGATCTTCT TAATAAGTAT CTTTACTTAT GTGGACGAGT TGACATGAGA CAAATTGAGA AGACAATTCA
GTACTTGATT GGATCTGGAA TGGTAAGATC TTATACATCT TCTGTAGTCT ATCTTGGTCT TCAGCGATTG TAGTTTTCAT
AATGAAACAT ACTCGTACTT GCCGTTTAAC AGCTACTACA TTTGGGCCGT GGTTGAACAA GGGCCTGAAA TATAAATTTT
ATTACCTAAT GCATCGAGTG TTATTAATGT GTTTCTGTCA GCAAAAATAT ACACATGAAA GCCATTGACC TATTTTAGGG
TCTACCTTCT AAAAATGAAG GTCTAGATTA TTAGAGTTGG ATTCAACTTT CTTGAAATTT CTTATAAATT TTTCTACTTG
TACTTTTAGG TGTAGAAAAA ATGAATAAGT TTCTCTATAA ACCAAAATTA CCGTATGCAT AAGTTAAAAA GAAAAAAAAA
ATCTTTTAGA TAAGCTAATA GGAGAGAGCT TCTACAAAAT AGCTAATGCA TAAGCTAATT TTTAGCTATG ATGAAGCTCA
TTTTATTTCA TTTTTCCTAT AGAGATGTTT GTGGAGAAGT TTATGCAAAC AGACCGTACA TGACATACAG CATTATTTTG
TACTTGACAT TCAGCATTAT TTTGCACTTC TCACTTTTCC AGTATTGTCC TTGACTGATT GATATTGATG GATAGGATCC
TCGGACTGAG AACAGTCCCT ACCTTGGTTT CATTTACACT TCATTTCAAG AGAGGGCAAC CTTCATATCC CACGGAAACA
CAGCCAGGCT TGCTAAGGAG CATGGTGATA TAAAGTTGGC CCAGATCTGC GGCATGATTG CCTCGGATGA GAAACGCCAT
GAGACTGCAT ACACAAAGAT AGTGGAAAAG CTGTTTGAGG TTGACCCTGA TGGAACTGTT ATGGCGTTTG CAGACATGAT
GAGGAAGAAA ATTGCCATGC CAGCACATCT TATGTATGAT GGCCTTGACG ACAACCTGTT TGATAACTAC TCTGCTGTAG
CCCAACGCAT TGGGGTCTAT ACTGCCAAGG ACTATGCTGA TATACTTGAA TTTCTGGTGG GGAGGTGGAA GGTGGAGGAT
CTAACAGGAC TATCAAGCGA GGGAAGGAAG GCTCAGGATT ACGTTTGTGG GCTGCCACCA AGAATCAGAA GGTTGGAGGA
GAGAGCTCAA GCAAGAGTCA AGGAGTCATC AAAAATTCGG TTCAGTTGGA TTCATGACAG GGAAGTACTA CTCTAAATGC
ACCAAGGAAG CATCGTGAAT GTTCCTGGAA AACCATTCTG AGAAATGTTG AATAGTTGAA GATTCAGTAT GTCATTTTTT
TTTTCTCTTT TTGCCTTTTT TTTGGTCTGT TATATGTCAC TGTAAGGTGA AACAGTTGTT CTTGCATGGT TCGCAAGTCA
CGCAATTAGG GGCAACTGTA GTATTAGAAA TGCTATTTTT TGTTTCCCTT TTCTTTGTGG TAGTGATGTC TGTTGAAGCA
TAAGCAAAAC GTTTTTCTAT GGCAATTTTG ATGATAAAGA AATTTAGTTC TTCCGTGGTT GGATATATTT CTACATAGTA
GAAGTTAGTT TGATGATGGT GTAGCGACCG AGTCTTGCTT ATTTGCCATT TTGCAATAGG ATAACTTAGA TATGCTCCCT
TTATTATTGT TGGCCAACTG AAATATGCTC ACTAACCAGA TTAATTGTCA CTACGGTTAC CAGGCAATCT TCTTGCGTGT
GATTCTGTCA AATGATTACA TGTAATTTTG GTGGGATAAT ATGGTTTGTT ACTATATTCA TGTATTCATA TTTGCATACG
CTATGTTAAT GTGAGAAGCA CGCAAACAAA AATTCTGCCT TTTATATTTT AACTTGTGTG TTTTAGGTTA ATGTTTTTTA
TATGCTTAAA AATATTAGAA AGATGTTTTG TTGAGGATTT AAATTTTTCC ATTTTAAGTT CTTTAAAGTA TATTTTCAAA
CTTTTATCAC TCCGAAACGT CTTTCTCTGT GAATTAATTA ACCCCTCTTT TCCTTTTCCA CTTAAGGATC TTGAAAAGTG
AAGCAGGTCA GAGTTTGCTG GCTATGGGGA AACACTTCTA CCATTTTCGA ACTATTGGGT TTGTCAGGAC AACGCGTCCA
TGTGATCCTT GCCTACCCTC TTCTTCTCGA ATTGAGATCT CTTTATACCT CAACTTCTAT GCTGTTGGTT TACAACCAGC
TCGTGTTCTT TTTCTTCGTT ATGTTGTATA TAACCATTAA ACAGATTTCA TATGACTCGT TGCTCTTGGA TCAACCTTCT
TCATAACCAT CATATCAATC CACGTCAACA ATCCATTACC GTGATGGTAT TTATTGTATT TCTTGACTTG CTACGAATTC
AATGTATGTT ATTTTTAGT

>Vigan.01G283700.01
GCCTAAACCA TCCATTAAGT GGTTCCCTTC TTTCCCTTTC ACTCGCTGCT CTCCTCCTTT GCTGCCTCAC ATCACTCTTC
TTCTTGGCTT GCTTTCTTTC ATTCTTTCTT CTCATACAAT TTCTAATTCG TTTGTCGAAA TCTCTTTCAC TCTCATCGTC
TTCCAATCAG GAAACATAAG AACCAAGAAT GGCTCTCAGA CTGAATCCTC TGCCAACCCA AACCTTCGCC CTTCCTCAGA
TGGCTAGTCT CAGATCTCCC AAGTTCCGCA TGGCTTCCAC CCTCCGCTCT GGTTCCAAAG AGGTTGAAAA TATTAAGAAG
CCTTTCACGC CTCCGAGAGA AGTGCATGTT CAAGTGACCC ATTCTATGCC TCCCCAGAAG ATTGAGATTT TCAAATCGTT
GGAGGATTGG GCTGAGCAGA ACGTCTTGAC TCTCCTTAAA CCTGTAGAAA AATGTTGGCA ACCACAGGAT TTTTTACCAG
ATCCTTCTGC AGATGGATTT GACGAGCAGG TGAGAGAACT GAGAGAGAGA GCAAAGGAGC TTCCTGATGA TTACTTTGTT
GTTCTGGTTG GAGACATGAT CACGGAGGAA GCCCTTCCTA CTTATCAAAC AATGTTAAAT ACATTGGATG GAGTTCGTGA
TGAAACAGGC GCTAGCCTTA CTTCCTGGGC AGTTTGGACT AGGGCATGGA CTGCTGAAGA AAATAGACAC GGTGATCTTC
TTAATAAGTA TCTTTACTTA TGTGGACGAG TTGACATGAG ACAAATTGAG AAGACAATTC AGTACTTGAT TGGATCTGGA
ATGGATCCTC GGACTGAGAA CAGTCCCTAC CTTGGTTTCA TTTACACTTC ATTTCAAGAG AGGGCAACCT TCATATCCCA
CGGAAACACA GCCAGGCTTG CTAAGGAGCA TGGTGATATA AAGTTGGCCC AGATCTGCGG CATGATTGCC TCGGATGAGA
AACGCCATGA GACTGCATAC ACAAAGATAG TGGAAAAGCT GTTTGAGGTT GACCCTGATG GAACTGTTAT GGCGTTTGCA
GACATGATGA GGAAGAAAAT TGCCATGCCA GCACATCTTA TGTATGATGG CCTTGACGAC AACCTGTTTG ATAACTACTC
TGCTGTAGCC CAACGCATTG GGGTCTATAC TGCCAAGGAC TATGCTGATA TACTTGAATT TCTGGTGGGG AGGTGGAAGG
TGGAGGATCT AACAGGACTA TCAAGCGAGG GAAGGAAGGC TCAGGATTAC GTTTGTGGGC TGCCACCAAG AATCAGAAGG
TTGGAGGAGA GAGCTCAAGC AAGAGTCAAG GAGTCATCAA AAATTCGGTT CAGTTGGATT CATGACAGGG AAGTACTACT
CTAAATGCAC CAAGGAAGCA TCGTGAATGT TCCTGGAAAA CCATTCTGAG AAATGTTGAA TAGTTGAAGA TTCAGTATGT
CATTTTTTTT TTCTCTTTTT GCCTTTTTTT TGGTCTGTTA TATGTCACTG TAAGGTGAAA CAGTTGTTCT TGCATGGTTC
GCAAGTCACG CAATTAGGGG CAACTGTAGT ATTAGAAATG CTATTTTTTG TTTCCCTTTT CTTTGTGGTA GTGATGTCTG
TTGAAGCATA AGCAAAACGT TTTTCTATGG CAATTTTGAT GATAAAGAAA TTTAGTTCTT CCGTGGTTGG ATATATTTCT
ACATAGTAGA AGTTAGTTTG ATGATGGTGT AGCGACCGAG TCTTGCTTAT TTGCCATTTT GCAATAGGAT AACTTAGATA
TGCTCCCTTT ATTATTGTTG GCCAACTGAA ATATGCTCAC TAACCAGATT AATTGTCACT ACGGTTACCA GGCAATCTTC
TTGCGTGTGA TTCTGTCAAA TGATTACATG TAATTTTGGT GGGATAATAT GGTTTGTTAC TATATTCATG TATTCATATT
TGCATACGCT ATGTTAATGT GAGAAGCACG CAAACAAAAA TTCTGCCTTT TATATTTTAA CTTGTGTGTT TTAGGTTAAT
GTTTTTTATA TGCTTAAAAA TATTAGAAAG ATGTTTTGTT GAGGATTTAA ATTTTTCCAT TTTAAGTTCT TTAAAGTATA
TTTTCAAACT TTTATCACTC CGAAACGTCT TTCTCTGTGA ATTAATTAAC CCCTCTTTTC CTTTTCCACT TAAGGATCTT
GAAAAGTGAA GCAGGTCAGA GTTTGCTGGC TATGGGGAAA CACTTCTACC ATTTTCGAAC TATTGGGTTT GTCAGGACAA
CGCGTCCATG TGATCCTTGC CTACCCTCTT CTTCTCGAAT TGAGATCTCT TTATACCTCA ACTTCTATGC TGTTGGTTTA
CAACCAGCTC GTGTTCTTTT TCTTCGTTAT GTTGTATATA ACCATTAAAC AGATTTCATA TGACTCGTTG CTCTTGGATC
AACCTTCTTC ATAACCATCA TATCAATCCA CGTCAACAAT CCATTACCGT GATGGTATTT ATTGTATTTC TTGACTTGCT
ACGAATTCAA TGTATGTTAT TTTTAGT

>Vigan.01G283700.01
ATGGCTCTCA GACTGAATCC TCTGCCAACC CAAACCTTCG CCCTTCCTCA GATGGCTAGT CTCAGATCTC CCAAGTTCCG
CATGGCTTCC ACCCTCCGCT CTGGTTCCAA AGAGGTTGAA AATATTAAGA AGCCTTTCAC GCCTCCGAGA GAAGTGCATG
TTCAAGTGAC CCATTCTATG CCTCCCCAGA AGATTGAGAT TTTCAAATCG TTGGAGGATT GGGCTGAGCA GAACGTCTTG
ACTCTCCTTA AACCTGTAGA AAAATGTTGG CAACCACAGG ATTTTTTACC AGATCCTTCT GCAGATGGAT TTGACGAGCA
GGTGAGAGAA CTGAGAGAGA GAGCAAAGGA GCTTCCTGAT GATTACTTTG TTGTTCTGGT TGGAGACATG ATCACGGAGG
AAGCCCTTCC TACTTATCAA ACAATGTTAA ATACATTGGA TGGAGTTCGT GATGAAACAG GCGCTAGCCT TACTTCCTGG
GCAGTTTGGA CTAGGGCATG GACTGCTGAA GAAAATAGAC ACGGTGATCT TCTTAATAAG TATCTTTACT TATGTGGACG
AGTTGACATG AGACAAATTG AGAAGACAAT TCAGTACTTG ATTGGATCTG GAATGGATCC TCGGACTGAG AACAGTCCCT
ACCTTGGTTT CATTTACACT TCATTTCAAG AGAGGGCAAC CTTCATATCC CACGGAAACA CAGCCAGGCT TGCTAAGGAG
CATGGTGATA TAAAGTTGGC CCAGATCTGC GGCATGATTG CCTCGGATGA GAAACGCCAT GAGACTGCAT ACACAAAGAT
AGTGGAAAAG CTGTTTGAGG TTGACCCTGA TGGAACTGTT ATGGCGTTTG CAGACATGAT GAGGAAGAAA ATTGCCATGC
CAGCACATCT TATGTATGAT GGCCTTGACG ACAACCTGTT TGATAACTAC TCTGCTGTAG CCCAACGCAT TGGGGTCTAT
ACTGCCAAGG ACTATGCTGA TATACTTGAA TTTCTGGTGG GGAGGTGGAA GGTGGAGGAT CTAACAGGAC TATCAAGCGA
GGGAAGGAAG GCTCAGGATT ACGTTTGTGG GCTGCCACCA AGAATCAGAA GGTTGGAGGA GAGAGCTCAA GCAAGAGTCA
AGGAGTCATC AAAAATTCGG TTCAGTTGGA TTCATGACAG GGAAGTACTA CTCTAA

>Vigan.01G283700.01
MALRLNPLPT QTFALPQMAS LRSPKFRMAS TLRSGSKEVE NIKKPFTPPR EVHVQVTHSM PPQKIEIFKS LEDWAEQNVL
TLLKPVEKCW QPQDFLPDPS ADGFDEQVRE LRERAKELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASLTSW
AVWTRAWTAE ENRHGDLLNK YLYLCGRVDM RQIEKTIQYL IGSGMDPRTE NSPYLGFIYT SFQERATFIS HGNTARLAKE
HGDIKLAQIC GMIASDEKRH ETAYTKIVEK LFEVDPDGTV MAFADMMRKK IAMPAHLMYD GLDDNLFDNY SAVAQRIGVY
TAKDYADILE FLVGRWKVED LTGLSSEGRK AQDYVCGLPP RIRRLEERAQ ARVKESSKIR FSWIHDREVL L*