GBrowse Details

Vigan.01G270400.01

Basic Information:
Name: Vigan.01G270400.01
Multiple alignment
Variant Information
Position: Chr01:38490548..38492888 (+ strand)
Length: 2341
Functional Information:
Description: Similar to uncharacterized LOC101202853. [XP_004170381.1, Cucumis sativus]
InterPro: Protein of unknown function DUF1068 (IPR010471)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.11,8.42,1.57,2.68,2.53,2.08,1.41,2 .13
Arabidopsis thaliana homolog: AT1G05070.1
Structure :
Position: Chr01:38490548..38490564 (+ strand)
Length: 17
Type: five_prime_UTR
Position: Chr01:38490565..38490754 (+ strand)
Length: 190
Type: CDS
Position: Chr01:38491436..38491459 (+ strand)
Length: 24
Type: CDS
Position: Chr01:38492217..38492563 (+ strand)
Length: 347
Type: CDS
Position: Chr01:38492564..38492888 (+ strand)
Length: 325
Type: three_prime_UTR

>Vigan.01G270400.01 class=Sequence position=Chr01:38490548..38492888 (+ strand)
GTGAGTTTGT GAGAGAGATG GGTTTGAATT GTGGCGGCGT TGTGGTGAGG TTTGGTTTGT GGGTGGCGGC GCTGTCCATT
GCGGGCTACA TAGTGGGTCC TCCTCTCTAC TGGCACCTCG TCGAACTCCT CAACCATTCT TCTTCTTCTT CTTGCACTCC
CTGTGTCTGT GATTGTTCTT CCCAACCCAT CATTTCCATT CCCCAATGTA TATATACTTT CCCTCTAGTT CAATTCCACC
CCTTTTACCT TTTTCCTTTT CTGCCTTCAA CATCTTACCA ATTTCTTCTT TCTTCAAAAT AACTTCTTTC ATCACTCATG
TGCTTCCAAT TTAGATCTTC TTCTTCTTCT TTTTTCTTTG TTTCGTTATT ACTGCTACTT CTGGATTGAA ATCTGTTCTA
GGTCTCTCAA GTTGCATCAA GTAATCATAC GGGGACTTAT TAAGTGGCAT AAACAATATT CAATAGGCTT GCCCTAGCTT
AATTAGGCTG TAACTTTCCT TAATTAAATA TTAGTCTCTT GTATACTGAT ACTGTGAAAG TAATTTTTTT TAATTAATTA
CCAGGGTCCC CTTTTGCTTG GTTACATGTG GTTGTCACAT AGCATTCACC ATGAAACTCG CAATAAAACA AGAGTATCAT
GGCTTAGCCT ATTTGTATTC TAAATTAAGA GAAATACTAA CCTAAGCCCA ATAGCCTTGA AACATTTCTA CAGCTTTTGC
TTGCTTATCT TTAATAAATC TGTAGATTAT TTATTTCTGT ATGTGCTGTC AAAGCAATAG TGGTTCCAAT TGAGACTGTT
GTTTCATTAT GATTGTTGTT GCGTTCTCTT GATTGCACAC CAAGTCAATC ATGTGCTTAT TCCAGTTTCT TTATCTGTAT
TTATGCAGCG CTCAGCAACT CTTCATTTGA AGGTTGGTTT CCTGAATGAA TTCCTGTGAA ATATCTCAGC TGATGTACTC
TGCATGAGTA AACCTTTCTT TATTATCGTG ACCTCTCTAT GACTGAATCT GAAGCATATT TGTGTGATGA CAAGAGCCGA
AGTTACATAG TTACTCTCAC TCATTTAATA AGCTAACTCG TTTCTTTTTA GGTTGGGCGA ACTATCAGCA TATTTGTTTG
TTTTCCTTTT ATAAAATTTG ATTTATTTCT TTTGCCAAAT TTTCTTGTTT TTGAAAAATC TGTTATGCAA AGATTTTGTG
GTATATAATA TAGAGTTCTG ATTTATTTCA ACCTAGTATT CTACAGTGCT AAACAAAATT TCGGGGTACT CGTCTAGTGT
TGCAAACCAT TTTCTCTGAA GCATATAATA TGTTGTGTTC AAATGAAAGA ACAAACTTGT TTGAGTGACA TGGTATTCAT
GGTTTGGTGT GATGCATCAT TTTCATCACT AATAGGAAAT GGTCATGAAG TTAACATGAG GGAATTGTTA TAGATGAACT
TATTCATAAG TTAATTTATA GTTCATGAAA AAAATTTCTT CTTCTTTCCT ATGAGTATTT TTATACAAAT TTAATCAAAC
AAACTCTCGT ATTTGATATT TGTCTGCATG AAGAAGAGGA CAGAATTTTT ATTTTGCCTG CAGCTGTGTC ATCAGAGCCT
GCTGTTTCTA TGCCTGTTTT TCATGTCCAA TTGCTGTTTC TTCCCTCGAT TAATTGAATT GTCATTTAGA TTGTGCAAAG
CACGATCCAA AGGTGGATGG AGACACCGAA AACAATGTTG CAGAGCTACT GTCAGAAGAA CTAAATCTCC GGGAAACTGA
AGCTTTGAAA AATCAGCGTC GTGCTGACAT GGGTCTGCTG GAATCTAAGA AGATTGCATC TCAGTATCAA AAAGAAGCAG
ACAAGTGTAA TTCAGGAATG GAGACATGTG AGGAAGCCAG GGAAAAGGCT GAGATGGCCT TAGTGGCTCA GAAGAACCTC
TCTGCATTAT GGGAACTGAG AGCTCGTCAC AAAGGATGGC AAGAAGGGCT TGCCAAATCT AATTCTCGCT CTAAAGGGAA
ACTGCACTCT GCTTAGACTG CACTGGCCTA CATACTACTT TCAAATGGAA GTTATATATA GTTGGGGTAG TAGCCAATCA
TCATCATAGG TCCCTTATAA TTCTGGTATA TCCTTTAAGA GTCAAAACTG TAAAATCCTA ATACAAATGT TGCTGTATTT
CTAACCTCCA TTTTTGGTAC TTACTATATA TTTAAGACAG TTGAAAGCTG AGAAGTGTTA GGTTTTTTGT GACAAACTTC
TTACATAACA AAATTGTGTG ACTACTTGTT TCTGAAAGTT CTGGTTTGAA ATCAATTCTG ACTGTAGCTT ATTCTGGAAA
TATGGCATTG AACTACAGAG A

>Vigan.01G270400.01
GTGAGTTTGT GAGAGAGATG GGTTTGAATT GTGGCGGCGT TGTGGTGAGG TTTGGTTTGT GGGTGGCGGC GCTGTCCATT
GCGGGCTACA TAGTGGGTCC TCCTCTCTAC TGGCACCTCG TCGAACTCCT CAACCATTCT TCTTCTTCTT CTTGCACTCC
CTGTGTCTGT GATTGTTCTT CCCAACCCAT CATTTCCATT CCCCAATCGC TCAGCAACTC TTCATTTGAA GATTGTGCAA
AGCACGATCC AAAGGTGGAT GGAGACACCG AAAACAATGT TGCAGAGCTA CTGTCAGAAG AACTAAATCT CCGGGAAACT
GAAGCTTTGA AAAATCAGCG TCGTGCTGAC ATGGGTCTGC TGGAATCTAA GAAGATTGCA TCTCAGTATC AAAAAGAAGC
AGACAAGTGT AATTCAGGAA TGGAGACATG TGAGGAAGCC AGGGAAAAGG CTGAGATGGC CTTAGTGGCT CAGAAGAACC
TCTCTGCATT ATGGGAACTG AGAGCTCGTC ACAAAGGATG GCAAGAAGGG CTTGCCAAAT CTAATTCTCG CTCTAAAGGG
AAACTGCACT CTGCTTAGAC TGCACTGGCC TACATACTAC TTTCAAATGG AAGTTATATA TAGTTGGGGT AGTAGCCAAT
CATCATCATA GGTCCCTTAT AATTCTGGTA TATCCTTTAA GAGTCAAAAC TGTAAAATCC TAATACAAAT GTTGCTGTAT
TTCTAACCTC CATTTTTGGT ACTTACTATA TATTTAAGAC AGTTGAAAGC TGAGAAGTGT TAGGTTTTTT GTGACAAACT
TCTTACATAA CAAAATTGTG TGACTACTTG TTTCTGAAAG TTCTGGTTTG AAATCAATTC TGACTGTAGC TTATTCTGGA
AATATGGCAT TGAACTACAG AGA

>Vigan.01G270400.01
ATGGGTTTGA ATTGTGGCGG CGTTGTGGTG AGGTTTGGTT TGTGGGTGGC GGCGCTGTCC ATTGCGGGCT ACATAGTGGG
TCCTCCTCTC TACTGGCACC TCGTCGAACT CCTCAACCAT TCTTCTTCTT CTTCTTGCAC TCCCTGTGTC TGTGATTGTT
CTTCCCAACC CATCATTTCC ATTCCCCAAT CGCTCAGCAA CTCTTCATTT GAAGATTGTG CAAAGCACGA TCCAAAGGTG
GATGGAGACA CCGAAAACAA TGTTGCAGAG CTACTGTCAG AAGAACTAAA TCTCCGGGAA ACTGAAGCTT TGAAAAATCA
GCGTCGTGCT GACATGGGTC TGCTGGAATC TAAGAAGATT GCATCTCAGT ATCAAAAAGA AGCAGACAAG TGTAATTCAG
GAATGGAGAC ATGTGAGGAA GCCAGGGAAA AGGCTGAGAT GGCCTTAGTG GCTCAGAAGA ACCTCTCTGC ATTATGGGAA
CTGAGAGCTC GTCACAAAGG ATGGCAAGAA GGGCTTGCCA AATCTAATTC TCGCTCTAAA GGGAAACTGC ACTCTGCTTA
G

>Vigan.01G270400.01
MGLNCGGVVV RFGLWVAALS IAGYIVGPPL YWHLVELLNH SSSSSCTPCV CDCSSQPIIS IPQSLSNSSF EDCAKHDPKV
DGDTENNVAE LLSEELNLRE TEALKNQRRA DMGLLESKKI ASQYQKEADK CNSGMETCEE AREKAEMALV AQKNLSALWE
LRARHKGWQE GLAKSNSRSK GKLHSA*