GBrowse Details

Vigan.01G262800.01

Basic Information:
Name: Vigan.01G262800.01
Multiple alignment
Variant Information
Position: Chr01:37273477..37277217 (+ strand)
Length: 3741
Functional Information:
Description: Similar to cytochrome c6, chloroplastic-like isoform X1. [XP_003556673.1, Glycine max]
GO: Molecular Function: electron carrier activity (GO:0009055)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome c-like domain (IPR009056)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.40,4.25,13.56,0.52,2.60,1.29,1.85
Arabidopsis thaliana homolog: AT5G45040.1
Automatic updates:
Name: NM_001251451 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500456 (LOC100500456), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:37273477..37273558 (+ strand)
Length: 82
Type: five_prime_UTR
Position: Chr01:37273559..37273618 (+ strand)
Length: 60
Type: CDS
Position: Chr01:37273734..37273854 (+ strand)
Length: 121
Type: CDS
Position: Chr01:37276061..37276158 (+ strand)
Length: 98
Type: CDS
Position: Chr01:37276254..37276285 (+ strand)
Length: 32
Type: CDS
Position: Chr01:37276522..37276585 (+ strand)
Length: 64
Type: CDS
Position: Chr01:37276922..37277062 (+ strand)
Length: 141
Type: CDS
Position: Chr01:37277063..37277217 (+ strand)
Length: 155
Type: three_prime_UTR

>Vigan.01G262800.01 class=Sequence position=Chr01:37273477..37277217 (+ strand)
CATTTGTCAG GCTCTCCTTT GCAGACACAC TATCCAGTTT CAGTCGCGCG TCGAGCCCTT CTTATGCATC GAAACAAACG
AAATGAAAGT TGCTTCGTTG ATTTCTGGTT CCACTGATTA CACTCGCCTC TTCTCCATTA AGGTAGAACA CTCTTATCTT
GCTCACTTTC ATTGTGTGAT TTTGAAAGGT GTTATGTGTT AACCCAGAAA AAGAAACTGA CAAGTAGAAC ACTGGCTATT
GAAATGTTGA TTAAAAGGAC AATGCGATGA GGGAAAAGAA GCCAATTCTT GCATGGCAAG AACTGAAGTT CTTCAAGAGT
TTGGCTCCTC CTCTTGTGGC TGCTTTTCTT GTCTTATCTC CAATTTGCAC CACTCCACGT GAGTTCTCTC ATCACTCCTT
TCCTCTTTAA TGCTTCTGCT TTTGATTCAA ACTGCATCAC TGTCAACATG CAATTACCCA CTCTTTGTTT TATACATCAA
CTTTTAAAAA TCAATCCTTT TTTTTTCATG GGCATTGCTG CCGAAACAGT ACCGAAAATA ATTTAGATTT CATAATATTT
GAGTATCTTA GTACAATTGT ACCGTAGAGA GATTCGATTG TTTTCAGGAT TGAGTATTGT TGAAAGGACT GATTTCTTGA
ATCCCAATTG AATGAGATGT ACAAATATGG GAGATTCATA TCAATCTAGA AACACATCTT CGATGCATGA TTCTTCTTCA
AGGATACATA CATCTAACTG AAACAATGAA TAAGTAATAT AACTGACCTC TTATATTGTT ATCCTATTAC TGTGTAGGAT
AACTGTGTTG ATTTTTATAA TGATTAACTT TGAAAGTTAT ATTGAAGATA ATTTATAGTT TCTGATTAAT TGATAGAAAA
AAAATATTCT TTTACTAAAT ATTTTTACCT TTTAAACTTT AGAGCATCTG TAATTCAAAT TACAGAGTTT GTTAGACAGT
TCAAAGGGTG TTAGTGTCTT CGTCAATACC ATGTAAAAGA CACCTCTTTG AATAGAATAG GGAGGGTGTA AGTGTAAGGA
TGTACATTTG AAAATAATAC AAAAAATTAT CGTTCCGTGA TTTCCTTCCT CTTCCTATGT GTGTGTGTGA TTTCTTCCCA
AACAAATTGG TATCAAGGGC TAGGCTGATT CGTTAGTTGT GGGGTGCGTT CATGTACTGA AGAACCTGAA TTTTGAAAAG
GAAGAAATGG CGAGTTTGGA CAATGTTGTT TCTAGTAGTT TATCATTGTT TGAAGGAAAG AACTTTGATG ATTAGAGGGT
GAGGGTAATT GTTATATTCT GTTTCCAAGA CGTAGGAGAA GTGGTGAAGG TGGGATTTCA TGAATTAGGA ATAGATGCTA
CTGCCAATTA TAAGGAAATT TATAAATAAT TCAAGAAACT TGATTGCAAG GCCCGATTCT TGATTCATCA ATGTGTTGAT
GTTACTGTTT TTGGAAGAAT ATCCAAGGTC ACTACAACAA AACAAGTGTG AGATATATTT TGTTAAGAAC TATGGTGGTG
CTGACAAGAC AAAGAAAATC AAGTTTATGA CATTTAGAAT CTGCTGCAGA TTATTTCAAT AGAATTCAAA TACTGGTGAA
CGGAATGAGT CTTGCAAGGA GGAGCTCTCA GATCAGCAGC AGGTTGTTGA CAAGATCTTG AGAACTTTAA CTTGGCATTT
GATCATGTTG TGGCAAATGA AGAATCAAAG GCCTTGATTC AATGAGTATT GAAGAATTAC ATAATTCACC CCATGTACAA
AGAATTAATG AGAGGAGGAA TGCTGATAAG AGAAGGCTCC CGAGCAAACA TTACAAGTCT AAAACAGTTT AAAAAATAAA
GGGAGTTCGA ACCAGAAAGG GAAAGGGAAA GGAAAATGGA AAGGAGGAAG ATTGAATGAA TCAACTAGTG GCCAAGACCA
AACTGTTCAA GATCAGAGTG ATTTGACCAC CAAAAGATGA TTTTTTTAAT AACTCATTTA AATGAAAATT TTAGTCAGGG
ATTTATCAAC CAACACACTC ATATTTCAGG GACTAATTTG AATTTGTACT CAGAGAAAAT GTATTGAACT AGTTTGAGAT
AAACAAAAAT TGGTTGACTT GACACACTAC TTAATTGGTT AACAGGTTTC CTTCTCGCAT ATATGCCACA CTGTGACCAT
CAACTTCACA TCGTCGATCC TCAATTTCTC TCTTTTTGCG AAATGTTGCA AAATTGCATA GTTGCTTAAG GATCAAAGAA
CATGCACTCA AGGATTGAAT GATTTACCGC ACCTCTACAT CCAGAATTCT GATCCATTGC TAATTGTCAG TTATAACAAA
AGTGGCATAG GGTTTCAGAC TGAAAATTCA TCATCTCATC CCATGCTTGC TTTTTTCTTC TTTTGATCGG CCTCATCTCA
TGCTTGCGAA GTATTTGTGT GCCCAATAGG CTGAAATCCG TTTCTTGTTT TAGATCAACT TTGTTATTGT CTGAAATCAA
GTATCTCTTG AGAACTAGTA CTTCTGGACT TGTAAGCTAT TTTATAAGGA AATATTTACA TGTAAGAAAC ATGTAATTCA
TGTTTATTTT CTTGTGCTCT GCAGTTTCAA GTGCTCAAGC CGTAGATTTT CAGAGAGGAG CCACATTGTT TCGTCAAGCT
TGTATTGGAT GTCACGATGC AGGTGGAAAC ATAATACAAC CGGTGAGCAT CCCCTTATGC ATGCATGACA TCTCCTTATA
TCCTTGCAGA CTCAAATTTT TTTGTTCATT ATTGTTTTCC ACTATTTTAA CTTACAGGGG TCAACTCTAT TTACAAAGGA
TTTACAGAGG TAATTGGAGA GAAACTAAGC ACCCTCGTGA TGAATTGAAA ATATGATGGA GAAAGAAAGC TTTGAAATTT
TTAAGGATAC ACTTTTGAGT ACCAACTATT TCATGAGTTC GTTCTTTGGA ACATCAGCAA ATGTGAATTT AAAATTGACA
ATTTGTTGGC CTCTAGCGAA AGGTGCAGTA AACTTCTGAC TATTTTTTGA TATATCTTTG AAATTATCCA AATGTTACTC
AACAGAAATG GAGTTGATAC AGAAGAAGCG ATTTATCGTG TCACTTACTA TGGCAAAGGA CGAATGCCAG TAAGTTATCT
TGTGTAGATT TAAAGAATGA AATCATTATA CATTTTAGTG TATGCATGCA TTCTCTTGTC TTGGAGGAGT TAATTTAAAT
CATAGAAATG AAATCATATT CTTATGAAAC ATTACAATTT TTATGAGTTG GGGTATGTGC ATTTAAACCA TATAAACGGT
TTAGTTTAGA TTTGGGGTAC GTTTCATTTG TTAAAGAAAG CCAAAGAAAA GTGAAACAAG CTAACTCACC CTATCACACG
TATATACACA GTTAATATAT TTCACTTGAT GCCTTAATAT TTTGTTTTTC ATTGTTCATA TTTTATGTCT TGCACTTCCA
TGCAGGGCTT TGGTAAAGAG TGCATGCCAC GGGGTCAGTG CACATTCGGA GCTCGTTTGG AAGATGAAGA TATCAAGATA
TTGGCTCAGT TTGTCAAGTT GCAGGCTGAT CAAGGGTGGC CAAGTATAGA CACTCAAGAA AAGTGATTTA ATTCATGTTT
GGTTCCACTT ATTTGTAAAA TATAACTGTT TATTTCTTTT AACTTTTTTT TTTGAAAACT TTTGAAAATA AATTATTATT
TATGCAGTAT TAAGCTGAAC AAAACATGTT GACATTCCCG TTAAACAACA ATGTTGCAAA A

>Vigan.01G262800.01
CATTTGTCAG GCTCTCCTTT GCAGACACAC TATCCAGTTT CAGTCGCGCG TCGAGCCCTT CTTATGCATC GAAACAAACG
AAATGAAAGT TGCTTCGTTG ATTTCTGGTT CCACTGATTA CACTCGCCTC TTCTCCATTA AGGACAATGC GATGAGGGAA
AAGAAGCCAA TTCTTGCATG GCAAGAACTG AAGTTCTTCA AGAGTTTGGC TCCTCCTCTT GTGGCTGCTT TTCTTGTCTT
ATCTCCAATT TGCACCACTC CACTTTCAAG TGCTCAAGCC GTAGATTTTC AGAGAGGAGC CACATTGTTT CGTCAAGCTT
GTATTGGATG TCACGATGCA GGTGGAAACA TAATACAACC GGGGTCAACT CTATTTACAA AGGATTTACA GAGAAATGGA
GTTGATACAG AAGAAGCGAT TTATCGTGTC ACTTACTATG GCAAAGGACG AATGCCAGGC TTTGGTAAAG AGTGCATGCC
ACGGGGTCAG TGCACATTCG GAGCTCGTTT GGAAGATGAA GATATCAAGA TATTGGCTCA GTTTGTCAAG TTGCAGGCTG
ATCAAGGGTG GCCAAGTATA GACACTCAAG AAAAGTGATT TAATTCATGT TTGGTTCCAC TTATTTGTAA AATATAACTG
TTTATTTCTT TTAACTTTTT TTTTTGAAAA CTTTTGAAAA TAAATTATTA TTTATGCAGT ATTAAGCTGA ACAAAACATG
TTGACATTCC CGTTAAACAA CAATGTTGCA AAA

>Vigan.01G262800.01
ATGAAAGTTG CTTCGTTGAT TTCTGGTTCC ACTGATTACA CTCGCCTCTT CTCCATTAAG GACAATGCGA TGAGGGAAAA
GAAGCCAATT CTTGCATGGC AAGAACTGAA GTTCTTCAAG AGTTTGGCTC CTCCTCTTGT GGCTGCTTTT CTTGTCTTAT
CTCCAATTTG CACCACTCCA CTTTCAAGTG CTCAAGCCGT AGATTTTCAG AGAGGAGCCA CATTGTTTCG TCAAGCTTGT
ATTGGATGTC ACGATGCAGG TGGAAACATA ATACAACCGG GGTCAACTCT ATTTACAAAG GATTTACAGA GAAATGGAGT
TGATACAGAA GAAGCGATTT ATCGTGTCAC TTACTATGGC AAAGGACGAA TGCCAGGCTT TGGTAAAGAG TGCATGCCAC
GGGGTCAGTG CACATTCGGA GCTCGTTTGG AAGATGAAGA TATCAAGATA TTGGCTCAGT TTGTCAAGTT GCAGGCTGAT
CAAGGGTGGC CAAGTATAGA CACTCAAGAA AAGTGA

>Vigan.01G262800.01
MKVASLISGS TDYTRLFSIK DNAMREKKPI LAWQELKFFK SLAPPLVAAF LVLSPICTTP LSSAQAVDFQ RGATLFRQAC
IGCHDAGGNI IQPGSTLFTK DLQRNGVDTE EAIYRVTYYG KGRMPGFGKE CMPRGQCTFG ARLEDEDIKI LAQFVKLQAD
QGWPSIDTQE K*