GBrowse Details

Vigan.01G239700.01

Basic Information:
Name: Vigan.01G239700.01
Multiple alignment
Variant Information
Position: Chr01:32622964..32626619 (+ strand)
Length: 3656
Functional Information:
Description: Similar to Proteasome subunit beta type. [I1KXF0, Glycine max]
GO: Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Molecular Function: endopeptidase activity (GO:0004175)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Proteasome, subunit alpha/beta (IPR001353)
Proteasome beta-type subunit, conserved site (IPR016050)
Proteasome B-type subunit (IPR023333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:53.69,42.51,84.72,55.72,122.77,181.6 9,103.64,69.36
Arabidopsis thaliana homolog: AT3G60820.1
Automatic updates:
Name: NM_001251395 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306148 (LOC100306148), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289230 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome subunit beta type-1-like (LOC100810291), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289230 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome subunit beta type-1-like (LOC100810291), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:32622964..32623090 (+ strand)
Length: 127
Type: five_prime_UTR
Position: Chr01:32623091..32623137 (+ strand)
Length: 47
Type: CDS
Position: Chr01:32623219..32623326 (+ strand)
Length: 108
Type: CDS
Position: Chr01:32623481..32623562 (+ strand)
Length: 82
Type: CDS
Position: Chr01:32625559..32625688 (+ strand)
Length: 130
Type: CDS
Position: Chr01:32625766..32625908 (+ strand)
Length: 143
Type: CDS
Position: Chr01:32625994..32626080 (+ strand)
Length: 87
Type: CDS
Position: Chr01:32626152..32626226 (+ strand)
Length: 75
Type: CDS
Position: Chr01:32626227..32626619 (+ strand)
Length: 393
Type: three_prime_UTR

>Vigan.01G239700.01 class=Sequence position=Chr01:32622964..32626619 (+ strand)
AGTGAATAGA GTTAAAAAGA CTAGAGAGAG AAGGCAAGGG AAAAAAAAAA ACCTTTCTTT TTCACTTCGA CGCCCTAGTT
CATTCTCTTC TCCATTCTCT GTGTTTTCCA TTCTCCCTTC GCTCACTATG ACGAAGCAAC ACGCTAATTG GTCTCCATAC
GATAATAATG GAGGGTAAGG GTTCCCTTTC GCTGCTCTCT CTGAAGGAGT ATTTTCAAGT TTTCATTCGT TGATTTGTTT
GTTCACTTTG CACAGATCAT GTGTTGCGAT TGCTGGAGCC GATTACTGTG TTATCGCCGC AGACACCAGA ATGTCCACCG
GTTACAACAT CCTCACTCGG GATTACTCCA AAATCTCCCA ATTGTATGAT TTTCCCCTTA AAATTAAGTC TCCTCCGAAA
TAATTACTTT TTTATTTTTC AATTTTTCTG AAATTGCTTA GTTTACTTTA TCTTAGCATT GTTTGTTTGT TTGTTTGTGT
TGCTTGAGGA TGTAACTAAG GTTTCTATTG TTTACAGAGC GGAAAAGTGT GTGATGGCTT CTTCTGGTTT TCAAGCTGAT
GTGAAAGCCT TGCAGAAGGT TTTGTCTGCT AGGCATTTGG TGAGTTAAAA ACTCTCAAAG ATTAATACAA CTGAACAGAG
CTACTTAGAC TTGTGATTTC TTTTGGGTTT TCTTTGTAAT GTACTAACTA TGTTCTGCTT AATCTCTTAG TGTGTGTTCT
GTCAGCTTGT TTATCTATGT TGATGTTGGA TGAACTAAGA ACTATGATTG GGTCCAATCT AGTTTGTTTC CAACTCCCCC
TTGATTAAAA TAACTTATGA AATCATAAAC CTATAGCAAA CATGTTAGGC AAGTACTCAT CTGACTTGGC TTGGCTTTGA
GACGTTATCT GGTGAAATTA GAGAAAATCT CAATAATATG TTATTATTTG TGCAAGTAAG GTGTTGAGTG AATGTGCTGA
TATTTTCCAT GGTGCAGTGG ATTGATTTTC TTATACTTGG TTTAGCTTAT ATAAAAGAAA TATAATCCTT AAATTTTACC
AGCTTTCTAA TCGGTGGTTT GAAAAATGTG ATTATCTTGT AAAACTTGAG TTATCAGACT GGCTCTAATA AAGCTTCTAG
TTTTTTCTTT TTTTTCTATG GATGTATTTA ACCATATTAG TTTTTTGTTT GTTTTAGATG TTAGTTGTAA GCTGTAAACA
TCAATGAACC CTCTACACAC ATAACACATC CATAAATGGT ACCATGCAGT ACCTGTCGTG AGGAAGTAGA CTGTCATCAC
CAAATTCATC CACAGCCAAA TATTTAACCA CTCTACATGA CATGCATTTG CATGTATCCT CAATGGAATA ACAACCATGG
AAATCAAATG TTGAATTTAA AACATTCATA TTTTAAGTAC TTCTCAATTC TAGTTTGTTT TTATGCCTAT AATGTGCTAG
TAGATTTAAA TTAGGTTGAA ACCTAAAATT AATAAATTTT CTTGATTAGA TTCTAAGGTA CCTAGCAACT TACCATTTGA
ATTTTAGGGT CAATGGTATC ATCTGATACT TTAAAGTTAG AGTTACTCAT GAGTCATCTC AAATTTATTA TACTTGAAAA
AGAGAATGAT TTTATTATTT TCATTCATGA CATGACAATT ATATTCTCCT TATCTCTATT TGTAGCAATC TAATCTTCTA
AAAAAGGGAA ATAAGGAAAC AATATACTAA AAACTAATCT AGAAGATCAT ACACCTATTT TCTCTAATTA AGAAGATTCT
GTAGATATTT TCTCTAATTA AGAAGATTCT ATAGATATTT CCTCTAATTA CAACAATTAT ATGTCTCCAA TTCTGAGCAG
TCACTAAAGT GTTTGTTTTA TTGACTTCCC TCTTTCCTGT TTCTATTAAA TTCTGAAACA TTCCAGAGTT AGACACTGTT
ATGCTAGCTG CATGATATCA AAATTTCAAG GCATTTTAGT GAGAGTAGAC CCCTACATAA CCACGATGGA AAGAACTGTT
GATATTTTGA CTGACTTTCA CTATGATAAT AGCAATATTT TCTAGCATAT TGGTGTTTGA AATTATTGAG ACAGAAGCAC
ATATGGATGG ATATTTGGAA GATTAGTACT GAAAATGACT TACAGACTTG TATAAAGTAA CGAGTTTAAA GGTTGGGTTG
GATTTGTGTC CAGTGTAATG AAGTATCTTC ATGGGTTTGC ATAAAGAAAT CAAAAGCAGT ATAAGTCAGG AGATGGGGAA
GGTACAATGC ACATATGCTT GCTTGATGTA AATCAGGAAA TACATATATT GTGATTTTCT GCCCTAGTGG TGACAACTTT
AAGACGTTAA TATTGATGAT GTTTACCATA AAGAATGAGT CTTGATTTAC CTCTAAGTTT TATAGCTTTA CATTTTGCAT
TTATATATTG CCCTCTCCAG ACCTCACTAT GCAGGAGTGT GGGCTCTGGG CTAGTCTTTT ATCTTGTAAA ACCGGGGAAA
CTGCTGTATT AGGTCCTTTA TTTGAGATGT ACCTTCAGTT TCTCTCTTAT TTTAACTGTG ACAAAAAAAC TTGGAAGCCT
TTCATTGTGA TATCATCTTT TGACTTTGAA TGCAGATTTA TCAGCATCAA CATAACAAGC AAATGAGCTG CCCTGCAATG
GGTCAGCTTC TTTCAAACAC ACTTTATTAC AAACGCTTCT TTCCCTATTA TGCATTCAAT GTTTTGGGTG GCCTTGACAA
TGAAGGTATG CTATTTTTAG CTTTCTATGT TTGTTCACAT CTCATTTTTA TGATTGCTAA TTGCCACTTC AACCTGAAAC
AGGAAAGGGA TGTGTTTTCA CATATGATGC TGTTGGTTCC TATGAGAGGG TTGGATATAG TTCTCAGGGT TCTGGATCCA
CACTTATCAT GCCATTTCTG GATAACCAGC TGAAGTCTCC TAGCCCACTG CTGTTACCTG CCAAGGTGAC ATCTGAAATC
GGCTCTTTGC TTGAACTATT TGATTCTTTA GTTTTATGGA CGGACACTTA CATTAAAAAT TTTCTTTCAG GATGCTGTTA
CTCCACTGTC TGAATCAGAA GCAGTTGATC TGGTTAAAAC TGTTTTTGCA TCTGCAACTG AGAGAGATAT ATACACGGTA
AGTTTGTGTG ATATAATTAC CATTTGACTG TAGGATGAAC TTGGAACTTA ATGTGAATGT TTTTACAGGG GGACAAGGTT
GAAATCGTCA TCCTAAATGC CAGTGGTATT CGTCGTGAGT ACATGGACTT AAGGAAAGAC TAGTGCTCTC TAAAAAATGT
TTGAAATGCT TCTGGAATTT TAAATGGCAG TGGGGTTTTC CCATGAGGTG AAATTAAGAA TAGCATTTCC TCTGAAGTTG
CTTTGAGCAA GTACTTTTCT GTTCACATTA TAACTACTGG GATTCACTTA TATTTGCATT GGATTTTTGT CGTAGTCTAT
TTCTAAACTT TAGTGTGCAT TTTATATCTT GTTATAGCCT GTTTAAGTGC CGTCTTTTTC CATGATTGCA TTGTGTTTTG
CTTAGTAAGT TCAATATCTC ACGAATATTT TCTCAAAATT ACCTTTTAAA TCATTTAGTT AACGTATAAA TACGGTCCTC
CTTGAGGTGG CTAGTTTTGA ATTCGTTGTT CGAGGAATTT TCTAGCTATG AACGAG

>Vigan.01G239700.01
AGTGAATAGA GTTAAAAAGA CTAGAGAGAG AAGGCAAGGG AAAAAAAAAA ACCTTTCTTT TTCACTTCGA CGCCCTAGTT
CATTCTCTTC TCCATTCTCT GTGTTTTCCA TTCTCCCTTC GCTCACTATG ACGAAGCAAC ACGCTAATTG GTCTCCATAC
GATAATAATG GAGGATCATG TGTTGCGATT GCTGGAGCCG ATTACTGTGT TATCGCCGCA GACACCAGAA TGTCCACCGG
TTACAACATC CTCACTCGGG ATTACTCCAA AATCTCCCAA TTAGCGGAAA AGTGTGTGAT GGCTTCTTCT GGTTTTCAAG
CTGATGTGAA AGCCTTGCAG AAGGTTTTGT CTGCTAGGCA TTTGATTTAT CAGCATCAAC ATAACAAGCA AATGAGCTGC
CCTGCAATGG GTCAGCTTCT TTCAAACACA CTTTATTACA AACGCTTCTT TCCCTATTAT GCATTCAATG TTTTGGGTGG
CCTTGACAAT GAAGGAAAGG GATGTGTTTT CACATATGAT GCTGTTGGTT CCTATGAGAG GGTTGGATAT AGTTCTCAGG
GTTCTGGATC CACACTTATC ATGCCATTTC TGGATAACCA GCTGAAGTCT CCTAGCCCAC TGCTGTTACC TGCCAAGGAT
GCTGTTACTC CACTGTCTGA ATCAGAAGCA GTTGATCTGG TTAAAACTGT TTTTGCATCT GCAACTGAGA GAGATATATA
CACGGGGGAC AAGGTTGAAA TCGTCATCCT AAATGCCAGT GGTATTCGTC GTGAGTACAT GGACTTAAGG AAAGACTAGT
GCTCTCTAAA AAATGTTTGA AATGCTTCTG GAATTTTAAA TGGCAGTGGG GTTTTCCCAT GAGGTGAAAT TAAGAATAGC
ATTTCCTCTG AAGTTGCTTT GAGCAAGTAC TTTTCTGTTC ACATTATAAC TACTGGGATT CACTTATATT TGCATTGGAT
TTTTGTCGTA GTCTATTTCT AAACTTTAGT GTGCATTTTA TATCTTGTTA TAGCCTGTTT AAGTGCCGTC TTTTTCCATG
ATTGCATTGT GTTTTGCTTA GTAAGTTCAA TATCTCACGA ATATTTTCTC AAAATTACCT TTTAAATCAT TTAGTTAACG
TATAAATACG GTCCTCCTTG AGGTGGCTAG TTTTGAATTC GTTGTTCGAG GAATTTTCTA GCTATGAACG AG

>Vigan.01G239700.01
ATGACGAAGC AACACGCTAA TTGGTCTCCA TACGATAATA ATGGAGGATC ATGTGTTGCG ATTGCTGGAG CCGATTACTG
TGTTATCGCC GCAGACACCA GAATGTCCAC CGGTTACAAC ATCCTCACTC GGGATTACTC CAAAATCTCC CAATTAGCGG
AAAAGTGTGT GATGGCTTCT TCTGGTTTTC AAGCTGATGT GAAAGCCTTG CAGAAGGTTT TGTCTGCTAG GCATTTGATT
TATCAGCATC AACATAACAA GCAAATGAGC TGCCCTGCAA TGGGTCAGCT TCTTTCAAAC ACACTTTATT ACAAACGCTT
CTTTCCCTAT TATGCATTCA ATGTTTTGGG TGGCCTTGAC AATGAAGGAA AGGGATGTGT TTTCACATAT GATGCTGTTG
GTTCCTATGA GAGGGTTGGA TATAGTTCTC AGGGTTCTGG ATCCACACTT ATCATGCCAT TTCTGGATAA CCAGCTGAAG
TCTCCTAGCC CACTGCTGTT ACCTGCCAAG GATGCTGTTA CTCCACTGTC TGAATCAGAA GCAGTTGATC TGGTTAAAAC
TGTTTTTGCA TCTGCAACTG AGAGAGATAT ATACACGGGG GACAAGGTTG AAATCGTCAT CCTAAATGCC AGTGGTATTC
GTCGTGAGTA CATGGACTTA AGGAAAGACT AG

>Vigan.01G239700.01
MTKQHANWSP YDNNGGSCVA IAGADYCVIA ADTRMSTGYN ILTRDYSKIS QLAEKCVMAS SGFQADVKAL QKVLSARHLI
YQHQHNKQMS CPAMGQLLSN TLYYKRFFPY YAFNVLGGLD NEGKGCVFTY DAVGSYERVG YSSQGSGSTL IMPFLDNQLK
SPSPLLLPAK DAVTPLSESE AVDLVKTVFA SATERDIYTG DKVEIVILNA SGIRREYMDL RKD*