GBrowse Details

Vigan.01G175300.01

Basic Information:
Name: Vigan.01G175300.01
Multiple alignment
Variant Information
Position: Chr01:20350958..20356537 (+ strand)
Length: 5580
Functional Information:
Description: Similar to DNA-directed RNA polymerase II subunit RPB7. [P46279, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
InterPro: Ribosomal protein S1, RNA-binding domain (IPR003029)
RNA polymerase Rpb7, N-terminal (IPR005576)
Nucleic acid-binding, OB-fold (IPR012340)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.01,28.98,21.90,29.76,37.03,35.09, 36.85,25.10
Arabidopsis thaliana homolog: AT5G59180.1
Structure :
Position: Chr01:20350958..20351356 (+ strand)
Length: 399
Type: five_prime_UTR
Position: Chr01:20351357..20351472 (+ strand)
Length: 116
Type: CDS
Position: Chr01:20351711..20351876 (+ strand)
Length: 166
Type: CDS
Position: Chr01:20351972..20352022 (+ strand)
Length: 51
Type: CDS
Position: Chr01:20355134..20355199 (+ strand)
Length: 66
Type: CDS
Position: Chr01:20355326..20355394 (+ strand)
Length: 69
Type: CDS
Position: Chr01:20356255..20356317 (+ strand)
Length: 63
Type: CDS
Position: Chr01:20356318..20356537 (+ strand)
Length: 220
Type: three_prime_UTR

>Vigan.01G175300.01 class=Sequence position=Chr01:20350958..20356537 (+ strand)
GTTACACCAT CAAACTCTTG AATTGAAAAC CCTAATATTA GGAATCACAA TCACACTGTT CTATGTTTGT TTTTTCGTTT
ATCACAGAGG CTAATATATG ACGTTGTTTC TCTCTAAATT TCAGCATATC TTACTTCACT TTGACCATTG AAGTTCGCAT
ACTCAGTGTT ATTGCTCTTC TACTTCGGTA TGCTCCTGCT TCTCGCATTT AGTATAACAA TCGAAGTTTA GAACTTTGTT
GAGAAGGATT GAACATAATA TTCATTAGGT TTTAGGATTT TTATATTAGA ATTTGGTTTT TTGTTTTTTT ATAGTTGGAG
TCTATTCTTG TTCTGCTTTT TGTGGCCAGA CGTAACTGTC AAGGTTGGGT AAGAAGGGAG GAAAAGGAGA AACGCGAAAA
TGTTCTTCCA CATAGTGCTG GAGCGAAATA TGCAGCTCCA TCCACGCTAC TTTGGTCGTA ACCTTCGTGA TAACCTTGTT
TCCAAGCTAA TGAAAGATGT GGAAGGCACT TGCAGGTGTT TTGTTCTTCA TTGATATTTT TTCTTCATCG TGATTAAATG
AAAAAGGAAA AAGGAAAAAT ATGTATTTTT AATTATTGGA TGATAATTGG GAATGTTAGT TGTAACTGTA TTTTGTGATT
AGATTTCATG CCAAGTATGT AATTCAGATA GTGGAACAAC AAAGCATTTC TCGCTAACTG ACTGTTTTGG ACCTTGGATG
GATTTAACAT TTGGATTTTC AACTATTCTG CAGTGGTCGA CATGGATTTG TGGTGGCAGT TACAGGGATA GAAAACATAG
GGAAAGGGCT AATTCGTGAT GGAACAGGGT TTGTGACATT TCCAGTTAAG TACCAATGTG TTGTCTTCAG ACCATTTAAG
GGGGAGATCT TGGAAGCTGT CGTCACCATG GTGAACAAGG TTTGGACAGT TCCTTTCTCT TTAGAGTAAT TACGCTGTGT
AACTCGAATT TGTGGAGATT GTGGTTTATG GCGGTTGAGT TCTGTTTTGT GCAGATGGGA TTTTTTGCTG AAGCTGGACC
TGTACAAATC TTTGTTTCCA ACCACGTATG TATTTGTGCT TTATAATGTG ATATTATATA TAGATCTTCA TGTCAAACAC
TAAAATTATG TGTCCTTTAT TATTCCTGTC TTTGGAATTT GTCTTTTATA ATGTGTTATA TCTAAAAGAT TCTTGCTATT
GTTCTTCATG CTAAACACTA AAAGTTATAT GTCCGTTATT ATTGTTGTCA TTGGAATGCC ATGGAAGTTT TAGAATTTGA
ATGCTAAAAT TATGTTTTTC ATTTATTGAT ATTTCAAAAT TTTGCAAATG AGGTTTTTGG ATATCCACCC CCTCCAAAGT
ACTTCGTAAC CCCAAAATTA TCCAATAGGG ACTTCTAATT GGGAGAAGGA TGGGTACCCA GACTTTATTA TTTCCTCAAA
GAACTCCAAG ACAGGGTCTT GGATGATCTT GCAAAGAGTC TAGACAGTTT GATCTGCCCA GAAAGTAGAA TACGCACACA
CAACACCAGG TCTTTTGAGA AGACCTGTCT CTCCCTTCCC TTTGTCTAAA ACAACACTGA AAAACTGAAG AAAACAACCT
TGTCCAGACT ATATATAATA GTCTATTTAC AACAGCTTAA CCCCCAAACA GTTATAACTG TCTATCCCCT TATTTCTTCT
TACATTGACC TTCCCCCTAA ACCTATCAAT ACCCCCTCCA TGAAGTTTCA CCTTGTCCTC AAGTTGAAAA GCAGGAAATT
CCGTATTGAT GGTTGTAGCA TCTTCCCAAC TGTTTTTAAT GGATGGGGGG TGTTGCCATG TAAGTAAAAC TTCCAAATCT
CCATTGGAGA AGTGCAAACG TCTAGCAGCA CCTCTGGATA GACCTCTAAC ATCAAATCTT CTGTAAGCAT AGGTGGAAGA
GGTTGAACTG GAGTGGTTGG TTGGACAGCG CGCTTGAGGA GGGAGACAGG AAAGACTGGA TGAATTCTGC TGTGAGTAGG
GAGATCCAGT TTAAAGCTAC AACCCCTAAG CATTCCTTGA CTGTATAAAG ACCGTAAAGT CTGGGCCTGG GCTTCTCATA
GGTCTGTGAG CCAACAATTT TAGATGATAG GTTGCAACTT AAGGTACACC CAATCACCTA TTTGGAATTC CACCTCCCTC
CGATGTTTAT TTGCCTGCAC CTTATTCTGT TCCTGGACTT TGCATAAATT TTCTTTCAAC TCCCTCAATA TATCATCTCA
TTCTTGTTGT AATTGATTCA CACTACCTTG GATGGGATAG TAGTACCTTT TAGCAGCAGA GGAGGGTCAC AGCCATAGAG
GGCCTTAAAA GGGGACATCT TTGTAGAAGC ACTGTAGTTA GTATTAAACC AGAATTCTGC CCAAGACAAC CACTCTGGCC
ACTTCCTAGG ATGTGTACTG GTCATGCAAC GAAAATAAGT CTCTAGGCAG CGATTAACCA CCTTTGTTTG GCCATCGATT
GGGGATGATA GGCAGTGCTG AACTTGAGTT TTGTGGAGGC CTGTTTAAAC AACTCTTTCC AAAAATTGCT TAAGAAAATA
TTGTCTCTAT CAGAGACACT CGTATAGGGA AACCCATGAA GTTTTACTAT TTCTTTAATG AACAACTGAG CTACTTCTGC
TGCTGTAAAG GGGGGAGCTA GGGCCAAAAA ATGAGCATAC TTAGTGAGTC TATCCACCAC CACTAGGATT GTGTCTTTCC
CTTGGACTTT AGGCAGGTCC CCTAATGAAA TCCATAGAAA TGTCAGACCA GACCTGAGTT GGAATGGGTA GAGGCTGTAA
TAAGCCTGTT GGAGCAATTG TTTCAGCTTT GTTCCTTTGA CAAACTTTAC ACTACTGAAC CCACTCTTTA ATGTCTTTTT
TCATACCCTC CCAATAAAGG ACCCCGTTAG AAAATAACCA CTATGTCCTC CTGTAGGAGA CTCATGCATC TCCTTAATCA
GAGGATGTGA TTCGTTCTAC CACCACTGTC AGCCCCTTAA TCATCTCCTC CAATCTTTGG AACCTTCTCT GATTTTCATG
TTTCTGTTCT TTCACTATTC GCTCCAACCT ATCCAATCTT GCCTCCATTC TCATATTTAC CATGCCTCAC AACCACCACA
ACACCAGGAA AGAGGCTCTG AATACCAATG ATAGGTACCC ATACTTTATT ATTTCCTCAA AGAACTCCAA GACAGGTTCT
TGGATGATCT TGCAAAGGGA CCAGATAGTT TGGTCTGCCC ATAAAGTAGA ACATCCGCAC ACAACACCAG GTCTTTTGAG
AGGGACCTGT CTCTTCTTCC CTTTGTCTAA AACAACACTG AAAAACTGAA GAAAACAACC CTGTCCAGAC TATATATAAT
AGTCTGTTTA CAACAGCTTA ACCCCCATAC AGTTATAACT GTCTATCCCC TTATTTCTTC TTACATAACC TTCCCTCTAA
ACCTATCAGA GAATGCCTGA ATTATTTTGG GCTAGGACAG GATGACTATA GATAACTTCA TTTCTAATCT ATATTTTATT
TAATATGTAT TCTCTAGCTA TTTCCTAATT CCTCTTTATG TAAAGGTGCA CAAGTGCAGG AGTGAAAAAT AAAAGTGATA
TAACCATCTG ATGTTTCTTT TATATATGAA TGGTATCTCT TAGAAATTGG GCTTTAGGAC ATAACGCAAT CCCACAAAAT
TGGTCTGTAA AGTGAGAACT GCCCAATCCT TATAGTATGC ACTATTTAGG TCATGTCACT AGGTTATGTG TTACTAAGGG
CATCCCCTCA CACCCAACAC ATTGGAAGTG CTGGAGGCTG TTCAGCAGGC TACCTAAAGA GGGTGCAATT AAGGAGGGTC
AGGAGGACTG ATTATAATTC AGGCGATTTT GCCAACTTTA AGTTGTAATC AAAGCTTAAA TTCCCCTACA TATTTTTTGC
CTTCCTTCTT TTACATTCTG TTTGCTGATA CTAACTAACA TCAGTTTATA ATGGGATCGC TGGTGGCATC TATAATTTTA
AATCATAATG GGTATGCTTT AGTTTTACCA TACAACTCAA CCCATTAAAA CTTTCCCTGT TTTTCATCAA ATTAAAATAA
ATTACGGCAT TACTTTGAAA CTGAAAAGTT ACAAAATGTA ATTGTAGTTT TTTATACATA GATCTGTTTT TTGAGACCCT
TTTTTCCCCT TTTTAGTTGA TTCCGGATGA TATGGAGTTC CAGTCTGGAG ACATGCCAAA TTACACTACT TCAGATGGAT
CTGTATGTAT CATTTATTGC TTCCCCAATG GAAAAGAAGA GAGCAAATTA TTTATATTCT GTTTGTTGTC ATGCCTTATT
TGATGATTAT GGGTTATGTA TTTATTTTAG TAAATTGGTC TTTTGCAGGT TAAGATTCAA AAAGATAGTG AAGTTAGACT
AAAGATAATT GGGACTCGAG TGGATGCTAC TGAAATTGTA TGTACATATA TTATGCATTA TACTTTATTT TGTTGATTGC
TGTTAATTTA AGCTCCATCA GTTTTATACT AAATTCTGTT TTGAGAAATT TAAAATAATA GAAAGATTTT TAGCTCTGTA
AAGGATATAG CTTTTGTTTT TCCCACATAA TTTTTCACAA TTACAAATGC CTTTGAGAAG AGCCTTTCAG TTTTTGCTAA
TTTTAATGCA TAGTTCATCT CATGACCACT ATCTTTGCAT TATTCTGTCA ATATCATGAA ACTGGTGATA TTTTACGTCT
CTGGAATGCT AATTTATGCT CTGTTTGCTG GTAAACTTAA CCCTTGTCCA AAGTAATCAA ACGAGGAATT TTACTAAGCA
ATGTTTCTAG CTACCAGGAT GGTCTTATAA ATTTACGCCC ATATTTGTGG TATGCAAATA AGCATTGGCA CTCCGCGCTG
CAAAGTAAAC TCTTGAATGT CGGGAGAAAA TTATGAGTAG AGATATTTTC CAGTTACTGA ATGCAATCAG AATGATATTA
TTTTAACCAC CTTGATGTCA CTTGTTGCCT GTATTGTTCC CGCCATGTTT ATTTGTACGC CTTGTGTGAA AGAACTCATG
ATGCTGATGG CCTTGTAAAA CTAATATCAT TTTAGAAAGC GTATGATACT AGGTTGAACG CTGTTAAGTT TTATTACTCC
TGCACGTGTT GGTCTATGTT TTCCTTCCCT TCAATTGTAG TGCTATAGAT ATGAACTTTG CAACTGTTCA GACACAAATC
AGTTTTTTCT TCGCATATTG AATATTTATG TGGTTTTAAA TTTGAATGTG TTTTTTTTCA ACTCACTTAT CTGATATAAT
GCGTCTTCTT TTGGCAGTTC TGCATAGGTA CCATAAAAGA TGATTTCTTG GGTGTGATCA ACGACCCTGC AACAGTTTAA
ATACCCCTTT CTGTACTCTT TTATCGTATA TAGTTTACAT GACTTGGGTT TTCCCACCTT GAATCCTCCA ACAATATTGT
GTTGTATTAG TCGACTGTTA AAAGTACCAA GTCGTTAAAT TTTGGTTCCA GAATTAATAT TCAACTCCAC AAGTAATTTT
AGGTGTGTGT AATAGCTTCA AATTTAGAGG AAATTACATT TTTATTTTTA TTTCAAATTT 

>Vigan.01G175300.01
GTTACACCAT CAAACTCTTG AATTGAAAAC CCTAATATTA GGAATCACAA TCACACTGTT CTATGTTTGT TTTTTCGTTT
ATCACAGAGG CTAATATATG ACGTTGTTTC TCTCTAAATT TCAGCATATC TTACTTCACT TTGACCATTG AAGTTCGCAT
ACTCAGTGTT ATTGCTCTTC TACTTCGGTA TGCTCCTGCT TCTCGCATTT AGTATAACAA TCGAAGTTTA GAACTTTGTT
GAGAAGGATT GAACATAATA TTCATTAGGT TTTAGGATTT TTATATTAGA ATTTGGTTTT TTGTTTTTTT ATAGTTGGAG
TCTATTCTTG TTCTGCTTTT TGTGGCCAGA CGTAACTGTC AAGGTTGGGT AAGAAGGGAG GAAAAGGAGA AACGCGAAAA
TGTTCTTCCA CATAGTGCTG GAGCGAAATA TGCAGCTCCA TCCACGCTAC TTTGGTCGTA ACCTTCGTGA TAACCTTGTT
TCCAAGCTAA TGAAAGATGT GGAAGGCACT TGCAGTGGTC GACATGGATT TGTGGTGGCA GTTACAGGGA TAGAAAACAT
AGGGAAAGGG CTAATTCGTG ATGGAACAGG GTTTGTGACA TTTCCAGTTA AGTACCAATG TGTTGTCTTC AGACCATTTA
AGGGGGAGAT CTTGGAAGCT GTCGTCACCA TGGTGAACAA GATGGGATTT TTTGCTGAAG CTGGACCTGT ACAAATCTTT
GTTTCCAACC ACTTGATTCC GGATGATATG GAGTTCCAGT CTGGAGACAT GCCAAATTAC ACTACTTCAG ATGGATCTGT
TAAGATTCAA AAAGATAGTG AAGTTAGACT AAAGATAATT GGGACTCGAG TGGATGCTAC TGAAATTTTC TGCATAGGTA
CCATAAAAGA TGATTTCTTG GGTGTGATCA ACGACCCTGC AACAGTTTAA ATACCCCTTT CTGTACTCTT TTATCGTATA
TAGTTTACAT GACTTGGGTT TTCCCACCTT GAATCCTCCA ACAATATTGT GTTGTATTAG TCGACTGTTA AAAGTACCAA
GTCGTTAAAT TTTGGTTCCA GAATTAATAT TCAACTCCAC AAGTAATTTT AGGTGTGTGT AATAGCTTCA AATTTAGAGG
AAATTACATT TTTATTTTTA TTTCAAATTT 

>Vigan.01G175300.01
ATGTTCTTCC ACATAGTGCT GGAGCGAAAT ATGCAGCTCC ATCCACGCTA CTTTGGTCGT AACCTTCGTG ATAACCTTGT
TTCCAAGCTA ATGAAAGATG TGGAAGGCAC TTGCAGTGGT CGACATGGAT TTGTGGTGGC AGTTACAGGG ATAGAAAACA
TAGGGAAAGG GCTAATTCGT GATGGAACAG GGTTTGTGAC ATTTCCAGTT AAGTACCAAT GTGTTGTCTT CAGACCATTT
AAGGGGGAGA TCTTGGAAGC TGTCGTCACC ATGGTGAACA AGATGGGATT TTTTGCTGAA GCTGGACCTG TACAAATCTT
TGTTTCCAAC CACTTGATTC CGGATGATAT GGAGTTCCAG TCTGGAGACA TGCCAAATTA CACTACTTCA GATGGATCTG
TTAAGATTCA AAAAGATAGT GAAGTTAGAC TAAAGATAAT TGGGACTCGA GTGGATGCTA CTGAAATTTT CTGCATAGGT
ACCATAAAAG ATGATTTCTT GGGTGTGATC AACGACCCTG CAACAGTTTA A

>Vigan.01G175300.01
MFFHIVLERN MQLHPRYFGR NLRDNLVSKL MKDVEGTCSG RHGFVVAVTG IENIGKGLIR DGTGFVTFPV KYQCVVFRPF
KGEILEAVVT MVNKMGFFAE AGPVQIFVSN HLIPDDMEFQ SGDMPNYTTS DGSVKIQKDS EVRLKIIGTR VDATEIFCIG
TIKDDFLGVI NDPATV*