GBrowse Details

Vigan.01G078500.01

Basic Information:
Name: Vigan.01G078500.01
Multiple alignment
Variant Information
Position: Chr01:6336808..6339439 (- strand)
Length: 2632
Functional Information:
Description: Similar to Holocarboxylase synthetase. [B3TM33, Elaeis guineensis var. tenera]
InterPro: Uncharacterised conserved protein UCP009193 (IPR016549)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:319.03,222.06,50.66,56.69,102.51,154 .58,76.39,62.25
Automatic updates:
Name: NM_001251036 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527566 (LOC100527566), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:6336808..6337110 (- strand)
Length: 303
Type: three_prime_UTR
Position: Chr01:6337111..6337521 (- strand)
Length: 411
Type: CDS
Position: Chr01:6338660..6338740 (- strand)
Length: 81
Type: CDS
Position: Chr01:6339097..6339255 (- strand)
Length: 159
Type: CDS
Position: Chr01:6339256..6339439 (- strand)
Length: 184
Type: five_prime_UTR

>Vigan.01G078500.01 class=Sequence position=Chr01:6336808..6339439 (- strand)
CGTGTACACC GTATTTTTCT TCTCTCTTTT CTTTTTTCTC ATTCGTTCAT ATATCATATC ATATCGCGTT CTGTTCCCTT
TTTTTTTTTC TTAATTTCAT TCTCTCCGTC TCTCTTTCTC TCTCAACACA CCCACAGCAC CAAATAAAAC ACACCACCAA
CTTCGCAGTG CTCCTTCTCC TTCGATGGCG AAGAAGCGAA AGTCGGTGGC CACGCGCCTC GACGAAGTGG ATCGTACCAT
GTACTCCACC TTTTGCAGCA CCGCCAACTC CCTCTCTCAT CTCTACACCC ACGCCATGAA CCAACAGAAA CTCTCTTTCC
AGGCCGGTGA ACGACACGCT CTCGTGAGAC CCCTCCTCTC CTACTCCGAC CTTTCGTGTT TTTTCCCCTA ATTTTTTATT
TTTTTTCGGT TTCGATTAAA TGGGATTTGC GCACGCGCGC ACCTTGAACG AAAGCACGGT CCTTTTGTTT TAATTATTGT
TTATTGTGTT AGGGTTACCA TGAACGATAT CAGATTTTGA TTTAATTCGT GATTTCTGTC TGAAGTTGTT TGAGCACTGG
TCCGATTTCC AATTTGTTTG TTTCTCCGAG AAACTAGAGA TTGCTGTTTG TTTTGTTTGG ACTTTGGATG CGTTGATAGG
AATCTGGTTC TTTGTTTCGT TCTTGTGTGA TTAATGCTGC TTTCGTCTCG TCCTGACAGG AGAAATTGTA CCAGTGGATT
CTCAGGCAGC AGCAAGAAGG GTCTAGGGTG ACCACGATTG ATATTGTTAC CCATTTGCAG GTTTTTATTT TTATGTCTAT
GCAATGTTTT TTGCTCTATT GTGTGTTGTG TTTGCCTTTT GTTTCAATGG AAATACTCGT TTTAAGGATA TTTCGTGTAC
TCTATCTGTT CGTATAGCTT GTGGATCCCA TTGTCAATTG CCTCTAGTGT GAAATTTCCA TCCACTGCAT TTATGGATTC
ACATACAACT ATTGACGGAT TGACTTGACT TTAGGTATAT ATTTTCACAT GTTTATTTCT ACATTCAAGA CTTGATTCTT
GCTCCCCAGA TTATGGACCG CAGGATATGG CAAAAGGCCA ACATTCCACC ATATAAACAC ACTATGGCTG CTTATCGCCC
TCCCCTATGG TGGAGAGGTT TATGCCACAT TATGTTATAA CTTTTATTTA ACACCGTTGT TATCTCCAAC ATTGTATTTG
AGTTCAAGTA ACTCTTTAAG TGGCTATTGC ATTTGATCAA GAATGTTGTA GGGAGTTTTA CTAGTAGTCA TTTGACCAAA
AAATCCAAAA TAATCCACTT CAATTTGAAA TTAATTTTGT AAAGCTAATT TCATTTAAGT TAACTTGCAA ATGTTCACCT
TAAAACTATT TTAAGGGACA TGATCCCTGA AGTCTTGATT TTAGAATCTT AAAGCTCTTT TGATACCGGT CTCTAAGTAG
AAATAGAGAT TCACCTCAAT AATCTATTGT AATCTTTAAT AGAAAACTTT TGTTACAAGA ATTACTTGTA TTTAATTTTG
TTATGATTGG AAAATAACAT GCAACACTTA GAAACTACAT CTTATAAGGA CAATCCCTAA AAAGGACTCA TGGATATATC
AGAAAACGTT TATACTTATG ATTTGTCTGG ACAAGGAATA CAATGACTGT CTGTCTGCCC TTTATACTGC CCCAATGTTT
TGTTCGTGTA AGAGTTGGGT CTTTGGCTGT GTGTCAATCA GATCTTGCTT GTTGGATTAC AGATAGAGCA TGAAAAGTAA
AGTCTTTATC TTTTCCATTT CACTTGAACC GGAATTTCCT TCGTATTTTT TACAATGGTG TTATTTCAGG ATATCCATCA
AAATAGATGA GTCCATTTTT TGGATTTATC TGAATAAAGG AATATAGATA TAATGATGTG CGTTGCGTGT GCTTGTAGAA
TGAGCTCGAA TATGGGGGAG AGGAGGCACC AGTGTCCCCA AGGCAGCCAA TGCATCAACA GAACTCCCAG ACTGCAATGC
ACACTAACTT TGGTGGCAGC ATACCGTCTA ATGCATTTGG AGCGACTGTG GCAGGGCAGG GGATACGAGC TGGGCAACCT
GATCAACAAG CAAAGAACTC AGTGTTCTCA AATGCACTCT CTAGCCCTAT TCGTCGCAGC CTTCAGCCAT ATCATCTGGC
TCAGGGGAGC TTTCCTTCAG GTAATATCAT GTCATCAGGA ACTGGAAATG GAACCCGGAA CAGTGAGATG ACTTATCCTA
ATGGCCAGAA CAGGGACTCA AATTCTTCTA ACTCTAGTGA TTGCATGGAC ATGCATTCAG ATAGTCCTGG TCATGATTTT
TCATACTAGT GCTGTCATAG TTAGAATAGG GAGAGAAAAA GAGGTCATTT ATGAAATTGA TGATCATAAA TGTGTGGTGA
AAAATGTCAA ATTTATTGTG GATAGACTTC AATTTATTTG TGTAGCATTG TCGTCCAGGT TGAAGCTTGA ACATCAGCTT
ACATGTTAAA ACAGATCGTC TTGAAAAATG TTGGTTATTT CCCAAGCAAT ATATAGTCAT ACCAGTGTGT GATGTTTGCA
TGCGATTTTT GCTAAGTTTA TTGATATGTG TATGTATAAT GTTTGTGTTA TGTAAATTAT ACTTGAAGAT CT

>Vigan.01G078500.01
CGTGTACACC GTATTTTTCT TCTCTCTTTT CTTTTTTCTC ATTCGTTCAT ATATCATATC ATATCGCGTT CTGTTCCCTT
TTTTTTTTTC TTAATTTCAT TCTCTCCGTC TCTCTTTCTC TCTCAACACA CCCACAGCAC CAAATAAAAC ACACCACCAA
CTTCGCAGTG CTCCTTCTCC TTCGATGGCG AAGAAGCGAA AGTCGGTGGC CACGCGCCTC GACGAAGTGG ATCGTACCAT
GTACTCCACC TTTTGCAGCA CCGCCAACTC CCTCTCTCAT CTCTACACCC ACGCCATGAA CCAACAGAAA CTCTCTTTCC
AGGCCGGTGA ACGACACGCT CTCGAGAAAT TGTACCAGTG GATTCTCAGG CAGCAGCAAG AAGGGTCTAG GGTGACCACG
ATTGATATTG TTACCCATTT GCAGAATGAG CTCGAATATG GGGGAGAGGA GGCACCAGTG TCCCCAAGGC AGCCAATGCA
TCAACAGAAC TCCCAGACTG CAATGCACAC TAACTTTGGT GGCAGCATAC CGTCTAATGC ATTTGGAGCG ACTGTGGCAG
GGCAGGGGAT ACGAGCTGGG CAACCTGATC AACAAGCAAA GAACTCAGTG TTCTCAAATG CACTCTCTAG CCCTATTCGT
CGCAGCCTTC AGCCATATCA TCTGGCTCAG GGGAGCTTTC CTTCAGGTAA TATCATGTCA TCAGGAACTG GAAATGGAAC
CCGGAACAGT GAGATGACTT ATCCTAATGG CCAGAACAGG GACTCAAATT CTTCTAACTC TAGTGATTGC ATGGACATGC
ATTCAGATAG TCCTGGTCAT GATTTTTCAT ACTAGTGCTG TCATAGTTAG AATAGGGAGA GAAAAAGAGG TCATTTATGA
AATTGATGAT CATAAATGTG TGGTGAAAAA TGTCAAATTT ATTGTGGATA GACTTCAATT TATTTGTGTA GCATTGTCGT
CCAGGTTGAA GCTTGAACAT CAGCTTACAT GTTAAAACAG ATCGTCTTGA AAAATGTTGG TTATTTCCCA AGCAATATAT
AGTCATACCA GTGTGTGATG TTTGCATGCG ATTTTTGCTA AGTTTATTGA TATGTGTATG TATAATGTTT GTGTTATGTA
AATTATACTT GAAGATCT

>Vigan.01G078500.01
ATGGCGAAGA AGCGAAAGTC GGTGGCCACG CGCCTCGACG AAGTGGATCG TACCATGTAC TCCACCTTTT GCAGCACCGC
CAACTCCCTC TCTCATCTCT ACACCCACGC CATGAACCAA CAGAAACTCT CTTTCCAGGC CGGTGAACGA CACGCTCTCG
AGAAATTGTA CCAGTGGATT CTCAGGCAGC AGCAAGAAGG GTCTAGGGTG ACCACGATTG ATATTGTTAC CCATTTGCAG
AATGAGCTCG AATATGGGGG AGAGGAGGCA CCAGTGTCCC CAAGGCAGCC AATGCATCAA CAGAACTCCC AGACTGCAAT
GCACACTAAC TTTGGTGGCA GCATACCGTC TAATGCATTT GGAGCGACTG TGGCAGGGCA GGGGATACGA GCTGGGCAAC
CTGATCAACA AGCAAAGAAC TCAGTGTTCT CAAATGCACT CTCTAGCCCT ATTCGTCGCA GCCTTCAGCC ATATCATCTG
GCTCAGGGGA GCTTTCCTTC AGGTAATATC ATGTCATCAG GAACTGGAAA TGGAACCCGG AACAGTGAGA TGACTTATCC
TAATGGCCAG AACAGGGACT CAAATTCTTC TAACTCTAGT GATTGCATGG ACATGCATTC AGATAGTCCT GGTCATGATT
TTTCATACTA G

>Vigan.01G078500.01
MAKKRKSVAT RLDEVDRTMY STFCSTANSL SHLYTHAMNQ QKLSFQAGER HALEKLYQWI LRQQQEGSRV TTIDIVTHLQ
NELEYGGEEA PVSPRQPMHQ QNSQTAMHTN FGGSIPSNAF GATVAGQGIR AGQPDQQAKN SVFSNALSSP IRRSLQPYHL
AQGSFPSGNI MSSGTGNGTR NSEMTYPNGQ NRDSNSSNSS DCMDMHSDSP GHDFSY*