GBrowse Details

Vigan.01G064000.01

Basic Information:
Name: Vigan.01G064000.01
Multiple alignment
Variant Information
Position: Chr01:5018356..5022064 (+ strand)
Length: 3709
Functional Information:
Description: Similar to calnexin homolog. [XP_003532294.1, Glycine max]
GO: Biological Process: protein folding (GO:0006457)
Cellular Component: endoplasmic reticulum (GO:0005783)
Molecular Function: calcium ion binding (GO:0005509)
Molecular Function: protein binding (GO:0005515)
Molecular Function: unfolded protein binding (GO:0051082)
InterPro: Calreticulin/calnexin (IPR001580)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Calreticulin/calnexin, P domain (IPR009033)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Calreticulin/calnexin, conserved site (IPR018124)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:33.17,74.99,82.94,43.16,214.41,171.0 3,62.08,67.76
Arabidopsis thaliana homolog: AT5G07340.2, AT5G61790.1
Structure :
Position: Chr01:5018356..5018441 (+ strand)
Length: 86
Type: five_prime_UTR
Position: Chr01:5018442..5018546 (+ strand)
Length: 105
Type: CDS
Position: Chr01:5018667..5018736 (+ strand)
Length: 70
Type: CDS
Position: Chr01:5020059..5021185 (+ strand)
Length: 1127
Type: CDS
Position: Chr01:5021292..5021363 (+ strand)
Length: 72
Type: CDS
Position: Chr01:5021449..5021565 (+ strand)
Length: 117
Type: CDS
Position: Chr01:5021681..5021815 (+ strand)
Length: 135
Type: CDS
Position: Chr01:5021816..5022064 (+ strand)
Length: 249
Type: three_prime_UTR

>Vigan.01G064000.01 class=Sequence position=Chr01:5018356..5022064 (+ strand)
TAACACAGCA CTGACATTTA ACCACTTTCT AGAGATCCCT AAGTTCTCTT CTGTTTCAGG TTAGGGTTTC ACAGTCACAG
TGAAACATGG GAGAACGGAA GCGAATTCCT CTCGCGATCT TTGCTGTGCT CTTCTTGGTT TCTGCCTCTT CTTTTCCGCT
TCTCCGCGCT TCGGACGACG CAGATGATGC TGTAATTTGT CATATTCTCC TTTCCATTTC TTTCAATTAT TGTGCTCTGA
ATGTTTGATA ATTGGATCTT TGTTTTCATC ATATTCTAAT TAATCAATTA TCACTTATTT GTGTGTTTTA GATCTTCTAC
GAGTCATTCG ATGAGGATTT TGAAGACCGT TGGATCGTGT CTCAGAAAGA TGAATACAGT GGTAATTAAC ACAAACTCAG
TTTATTCTTT GTGATTTCAT ATTGTTTCTC CAGTGATGAT TGGAAAATTT ATACTGTTTT GTAAATTTGT TTTTTTTATC
CAATCTTTGG TTAAGGCTGT TAGTTTCATC TTTTTTTATC AAGCTACTCA CTCACAGATG CGAATGTCAC TCAAGACAAT
ATTTCAATTC AATGTTGGAT TATTATTGTA AGGTTCAATC CAATGCTTGT CTAATGCTGT TAGTTTCAAT CTCAGGCAAA
TATGTCCAAA TCTAAATGTA TTGACGTGAT TGAACGAAAT TCAAGGCTAT CTTTTCTATA TACCTATGAT TATAGTCTAG
CAAATCAAAT TCTGTAAAAC ATAGTAGTAC AAGGGGTCTG CTAATGAGGG CCCAAATATG CCCTGATTAT GGTGTTGAAT
TATTTCAGTT ATTATTATTA TTTCAAAAAT GTTGTGTATT TTAACTCCCT TTGATTGAAT TGCGGTATTA AGCACCTCTT
GTATAAGATA TGTTTTTTCT CATTTTGTAC ATTTCCTTTA TTCCATTAAA CAGTGTCATC ATACAGTATA CCCTTGAAGT
ACTAGTTGTC ATTTGCATGG AAATAATGAT GTTTTGCTTG TAACATTAAT ATGGTAGAAG GCGACTGATG TTTAGCTAGT
TAACATAATG GAATATCCTT TTATTTCGCA GCACAATTTA CCGTTCTCAA TCGTATCGAC TGATGTTAGC TAATTAACAT
AATGGAATAT CCTTTTATTT CGCAGCACAA TTTACCGTTC TCAATCGTAT ATATATGTAT GTATATATAT AAATTATTAT
TAAAATTTTC TCTTTTTCAT TTTCACTCTA TTTTTCTCTA ACCGAATACG TATTCTCACA CGTATATGCA TATATGTACA
AGGGATGCAA TGTATATAGT GAGAGGGATA TTTGATTGGA GAGTGTGAGA AAGATTGATC ATACAACCGT AATTCTTAAT
CTTAAAAGCT ACTTATAGCC ACATGACCAT TAACCATGGT GCAATGGTCT AATTCTTATC ATTTGTGGTA AGATTTAACG
ATTGATATTA TGTGCAATGT TAAGGAATGT AATTGGTAGA ATATTTGATA TAAAAGGCAT CATTAAATAT ATTGATTTGC
TTTTCAATAT ATTTAATACT ATATTTTATT TTAAATCTTC TCTTGCTTAT CTGCGTTAAA GTCTATTACA TCTACAGTAG
ATTTGATATT TTAGATTTTA ATTTTTTGCT AGTGTAGTGT TGACTTGAAC GATCATATCT TGCAAAATCT GATGTAATAT
CTGTTATATG GTCTGGGTTC TAGGTGTCTG GAAACATGCC AAGAGTGAGG GACATGAGGA TTATGGTCTT CTTGTCAGTG
AGAAAGCAAG GAAATACGCC ATAGTGAAGG AACTTGAAGA GGCAGTGGGT CTCAAGGACG GAACTGTTGT TCTCCAGTTT
GAAACTCGGC TTCAGAATGG CCTTGAATGC GGTGGAGCTT ATCTAAAATA TCTGCGACCA CAGGATGCTG GATGGAAATC
TAAGGAATTT GACAACGAAT CTCCGTATTC TATCATGTTT GGTCCTGATA AGTGTGGGGC CACAAACAAA GTACACTTCA
TTTTCAAACA CAAGAATCCC AAGAGTGGGG AGTATGTTGA GCACCACCTT AAGCATCCCC CTTCTGTCCC TTCTGATAAA
TTGTCTCATG TTTACACGGC TATTTTGACG GCTGACAATG AGGTGCAAGT TTTGATAGAT GGGGAACAGA AGAAGAAGGC
AAACTTCTTA AGTGCTGATG ATTTTGAACC TCCTCTTATC CCTTCCAAGA CAATCCCAGA TCCTGAAGAT AAGAAGCCGG
AGGACTGGGA TGAGAGAGAG AAAATTCCAG ACCCAAGTGC GGTAAAGCCA GAGGACTGGG ATGAGGATGC ACCCTTGGAA
ATTGTTGATG AAGAAGCTGA AAAACCTGAA GGATGGTTAG ACGATGAACC TGAGGAGATA GATGATCCAG AGGCAACAAA
ACCGGAAGAT TGGGACGATG AGGAGGATGG TGAATGGGAA GCCCCAAAGA TTGAGAACCC AAAATGCGAA GCCGGCCCAG
GCTGTGGTGA GTGGAAGAGG CCAATGAAGA GGAATCCTGC TTATAAGGGA AAATGGCATG CCCCACTTAT TGAAAATCCT
GCTTATAAGG GTATATGGAA GCCTAGGGAT ATTCCAAACC CTGCTTACTT TGAACTAAAA AAACCTGATT TTGAGCCAAT
CGCTGCTATT GGTATTGAGA TTTGGACAAT GCAAGATGGC ATTTTGTTTG ACAACATCTT GATAGCTAAA GATGATAAAA
TTGCTGAGTC GTATCGGGAG ACTACTTGGA AACCCAAGTT TTCAGTTGAA AAAGAAAAAC AGAAGGCAGA GGAAGCTGCA
GCTGGATCGA GTGGTCTTGC AGGATTCCAG GTAACGTCGT TTTTCATTTT TAGTTTACTC TAGTTTTCAT CTTTTTTTTA
TTTGACTTTC AATCATTATG TCCTCATATG CAAAACATTA CATTTTGTCC TTGCAGAAGA AGGTGTTTGA CCTCTTATAT
AAGATCGCAG ACATTCCTTT CCTGAGTGCC TATAAGCCTA AAATCCTTGT AAGTAACATA CAAATATTTG TCTTCTTTCC
GAATAGCGTG TTCTTGGAAA ATGACTTAAA TTCTATCTAT CTTTTTTCTA CAGGATCTCA TCGAGAAAGG TGAAGAGCAA
CCCAATCTCA CTGTTGGCAT TCTGGTAGCC ATTTTGGTTG TCTTCGTGTC AATTTTCTTC AGGATTATAT TTGGTGGGAA
GAAGAAGCCC GTAAGTTGTT AATTAACTTT TATCTTTTTA TGTTATATTA TCTAGTTTGT TTGGCACTGA CTATATGTTG
GTCTCTGCAC TGTGTTCTGT TTGGGCCATG TGTTCTGTTG TGCAGACAAG GGTGGAGAAG ACAAACTTAG AACCCGCGGA
AAGTGCTTCT AACCAAAAAA GTGGTGAGAA TGAAGAAAAC AAAGAGAAGG AGGAATCGTC TGCTCCTCCA CGTCGTAGGT
CAACAAGGAG AGAGAATTGA AATATGATTG AATCGCTTGA CAGGGGCGGC CATTGAAGAA CACTACCGCA CTTAAATTTT
GAGCTTAGTT GAGCATTAGG CACGAAGGAG TGTAGATCAT TTTTGTGTTG TCTTGGAGAC TTCAAAGTAG TATTTTGTAT
GTTTTTGTAT CATGGGTTGG TCCCTTTGTG TTGTGTTGGT CACCTCTTTT TAAGCTAATT CAGGATGCTG GAACCATTAC
AATTATTTTC TATTTTTGTT TTTAAGCCA

>Vigan.01G064000.01
TAACACAGCA CTGACATTTA ACCACTTTCT AGAGATCCCT AAGTTCTCTT CTGTTTCAGG TTAGGGTTTC ACAGTCACAG
TGAAACATGG GAGAACGGAA GCGAATTCCT CTCGCGATCT TTGCTGTGCT CTTCTTGGTT TCTGCCTCTT CTTTTCCGCT
TCTCCGCGCT TCGGACGACG CAGATGATGC TATCTTCTAC GAGTCATTCG ATGAGGATTT TGAAGACCGT TGGATCGTGT
CTCAGAAAGA TGAATACAGT GGTGTCTGGA AACATGCCAA GAGTGAGGGA CATGAGGATT ATGGTCTTCT TGTCAGTGAG
AAAGCAAGGA AATACGCCAT AGTGAAGGAA CTTGAAGAGG CAGTGGGTCT CAAGGACGGA ACTGTTGTTC TCCAGTTTGA
AACTCGGCTT CAGAATGGCC TTGAATGCGG TGGAGCTTAT CTAAAATATC TGCGACCACA GGATGCTGGA TGGAAATCTA
AGGAATTTGA CAACGAATCT CCGTATTCTA TCATGTTTGG TCCTGATAAG TGTGGGGCCA CAAACAAAGT ACACTTCATT
TTCAAACACA AGAATCCCAA GAGTGGGGAG TATGTTGAGC ACCACCTTAA GCATCCCCCT TCTGTCCCTT CTGATAAATT
GTCTCATGTT TACACGGCTA TTTTGACGGC TGACAATGAG GTGCAAGTTT TGATAGATGG GGAACAGAAG AAGAAGGCAA
ACTTCTTAAG TGCTGATGAT TTTGAACCTC CTCTTATCCC TTCCAAGACA ATCCCAGATC CTGAAGATAA GAAGCCGGAG
GACTGGGATG AGAGAGAGAA AATTCCAGAC CCAAGTGCGG TAAAGCCAGA GGACTGGGAT GAGGATGCAC CCTTGGAAAT
TGTTGATGAA GAAGCTGAAA AACCTGAAGG ATGGTTAGAC GATGAACCTG AGGAGATAGA TGATCCAGAG GCAACAAAAC
CGGAAGATTG GGACGATGAG GAGGATGGTG AATGGGAAGC CCCAAAGATT GAGAACCCAA AATGCGAAGC CGGCCCAGGC
TGTGGTGAGT GGAAGAGGCC AATGAAGAGG AATCCTGCTT ATAAGGGAAA ATGGCATGCC CCACTTATTG AAAATCCTGC
TTATAAGGGT ATATGGAAGC CTAGGGATAT TCCAAACCCT GCTTACTTTG AACTAAAAAA ACCTGATTTT GAGCCAATCG
CTGCTATTGG TATTGAGATT TGGACAATGC AAGATGGCAT TTTGTTTGAC AACATCTTGA TAGCTAAAGA TGATAAAATT
GCTGAGTCGT ATCGGGAGAC TACTTGGAAA CCCAAGTTTT CAGTTGAAAA AGAAAAACAG AAGGCAGAGG AAGCTGCAGC
TGGATCGAGT GGTCTTGCAG GATTCCAGAA GAAGGTGTTT GACCTCTTAT ATAAGATCGC AGACATTCCT TTCCTGAGTG
CCTATAAGCC TAAAATCCTT GATCTCATCG AGAAAGGTGA AGAGCAACCC AATCTCACTG TTGGCATTCT GGTAGCCATT
TTGGTTGTCT TCGTGTCAAT TTTCTTCAGG ATTATATTTG GTGGGAAGAA GAAGCCCACA AGGGTGGAGA AGACAAACTT
AGAACCCGCG GAAAGTGCTT CTAACCAAAA AAGTGGTGAG AATGAAGAAA ACAAAGAGAA GGAGGAATCG TCTGCTCCTC
CACGTCGTAG GTCAACAAGG AGAGAGAATT GAAATATGAT TGAATCGCTT GACAGGGGCG GCCATTGAAG AACACTACCG
CACTTAAATT TTGAGCTTAG TTGAGCATTA GGCACGAAGG AGTGTAGATC ATTTTTGTGT TGTCTTGGAG ACTTCAAAGT
AGTATTTTGT ATGTTTTTGT ATCATGGGTT GGTCCCTTTG TGTTGTGTTG GTCACCTCTT TTTAAGCTAA TTCAGGATGC
TGGAACCATT ACAATTATTT TCTATTTTTG TTTTTAAGCC A

>Vigan.01G064000.01
ATGGGAGAAC GGAAGCGAAT TCCTCTCGCG ATCTTTGCTG TGCTCTTCTT GGTTTCTGCC TCTTCTTTTC CGCTTCTCCG
CGCTTCGGAC GACGCAGATG ATGCTATCTT CTACGAGTCA TTCGATGAGG ATTTTGAAGA CCGTTGGATC GTGTCTCAGA
AAGATGAATA CAGTGGTGTC TGGAAACATG CCAAGAGTGA GGGACATGAG GATTATGGTC TTCTTGTCAG TGAGAAAGCA
AGGAAATACG CCATAGTGAA GGAACTTGAA GAGGCAGTGG GTCTCAAGGA CGGAACTGTT GTTCTCCAGT TTGAAACTCG
GCTTCAGAAT GGCCTTGAAT GCGGTGGAGC TTATCTAAAA TATCTGCGAC CACAGGATGC TGGATGGAAA TCTAAGGAAT
TTGACAACGA ATCTCCGTAT TCTATCATGT TTGGTCCTGA TAAGTGTGGG GCCACAAACA AAGTACACTT CATTTTCAAA
CACAAGAATC CCAAGAGTGG GGAGTATGTT GAGCACCACC TTAAGCATCC CCCTTCTGTC CCTTCTGATA AATTGTCTCA
TGTTTACACG GCTATTTTGA CGGCTGACAA TGAGGTGCAA GTTTTGATAG ATGGGGAACA GAAGAAGAAG GCAAACTTCT
TAAGTGCTGA TGATTTTGAA CCTCCTCTTA TCCCTTCCAA GACAATCCCA GATCCTGAAG ATAAGAAGCC GGAGGACTGG
GATGAGAGAG AGAAAATTCC AGACCCAAGT GCGGTAAAGC CAGAGGACTG GGATGAGGAT GCACCCTTGG AAATTGTTGA
TGAAGAAGCT GAAAAACCTG AAGGATGGTT AGACGATGAA CCTGAGGAGA TAGATGATCC AGAGGCAACA AAACCGGAAG
ATTGGGACGA TGAGGAGGAT GGTGAATGGG AAGCCCCAAA GATTGAGAAC CCAAAATGCG AAGCCGGCCC AGGCTGTGGT
GAGTGGAAGA GGCCAATGAA GAGGAATCCT GCTTATAAGG GAAAATGGCA TGCCCCACTT ATTGAAAATC CTGCTTATAA
GGGTATATGG AAGCCTAGGG ATATTCCAAA CCCTGCTTAC TTTGAACTAA AAAAACCTGA TTTTGAGCCA ATCGCTGCTA
TTGGTATTGA GATTTGGACA ATGCAAGATG GCATTTTGTT TGACAACATC TTGATAGCTA AAGATGATAA AATTGCTGAG
TCGTATCGGG AGACTACTTG GAAACCCAAG TTTTCAGTTG AAAAAGAAAA ACAGAAGGCA GAGGAAGCTG CAGCTGGATC
GAGTGGTCTT GCAGGATTCC AGAAGAAGGT GTTTGACCTC TTATATAAGA TCGCAGACAT TCCTTTCCTG AGTGCCTATA
AGCCTAAAAT CCTTGATCTC ATCGAGAAAG GTGAAGAGCA ACCCAATCTC ACTGTTGGCA TTCTGGTAGC CATTTTGGTT
GTCTTCGTGT CAATTTTCTT CAGGATTATA TTTGGTGGGA AGAAGAAGCC CACAAGGGTG GAGAAGACAA ACTTAGAACC
CGCGGAAAGT GCTTCTAACC AAAAAAGTGG TGAGAATGAA GAAAACAAAG AGAAGGAGGA ATCGTCTGCT CCTCCACGTC
GTAGGTCAAC AAGGAGAGAG AATTGA

>Vigan.01G064000.01
MGERKRIPLA IFAVLFLVSA SSFPLLRASD DADDAIFYES FDEDFEDRWI VSQKDEYSGV WKHAKSEGHE DYGLLVSEKA
RKYAIVKELE EAVGLKDGTV VLQFETRLQN GLECGGAYLK YLRPQDAGWK SKEFDNESPY SIMFGPDKCG ATNKVHFIFK
HKNPKSGEYV EHHLKHPPSV PSDKLSHVYT AILTADNEVQ VLIDGEQKKK ANFLSADDFE PPLIPSKTIP DPEDKKPEDW
DEREKIPDPS AVKPEDWDED APLEIVDEEA EKPEGWLDDE PEEIDDPEAT KPEDWDDEED GEWEAPKIEN PKCEAGPGCG
EWKRPMKRNP AYKGKWHAPL IENPAYKGIW KPRDIPNPAY FELKKPDFEP IAAIGIEIWT MQDGILFDNI LIAKDDKIAE
SYRETTWKPK FSVEKEKQKA EEAAAGSSGL AGFQKKVFDL LYKIADIPFL SAYKPKILDL IEKGEEQPNL TVGILVAILV
VFVSIFFRII FGGKKKPTRV EKTNLEPAES ASNQKSGENE ENKEKEESSA PPRRRSTRRE N*