GBrowse Details

Vigan.01G049100.01

Basic Information:
Name: Vigan.01G049100.01
Multiple alignment
Variant Information
Position: Chr01:3625425..3628335 (+ strand)
Length: 2911
Functional Information:
Description: Similar to 1-aminocyclopropane 1-carboxylate synthase. [Q43858, Vigna radiata var. radiata]
GO: Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aminotransferases, class-I, pyridoxal-phosphate-binding site (IPR004838)
Aminotransferase, class I/classII (IPR004839)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.17,0.03,9.44,7.28,45.86,10.31,17.0 1,7.49
Arabidopsis thaliana homolog: AT1G01480.1, AT3G61510.1, AT4G11280.1, AT4G37770.1
Automatic updates:
Name: Z11562 NCBI(nuccore)
Organism: Vigna radiata var. radiata
Description: V.radiata mRNA for 1-aminocyclopropane-1-carboxylate synthase (partial).
PubMed ID: 1421146 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:3625425..3625721 (+ strand)
Length: 297
Type: five_prime_UTR
Position: Chr01:3625722..3625892 (+ strand)
Length: 171
Type: CDS
Position: Chr01:3625999..3626130 (+ strand)
Length: 132
Type: CDS
Position: Chr01:3626252..3626412 (+ strand)
Length: 161
Type: CDS
Position: Chr01:3626955..3627945 (+ strand)
Length: 991
Type: CDS
Position: Chr01:3627946..3628335 (+ strand)
Length: 390
Type: three_prime_UTR

>Vigan.01G049100.01 class=Sequence position=Chr01:3625425..3628335 (+ strand)
TGCGTACCAA CTCTTGCCTA ATTTTCAAAC CAAGAGCCAC ACCGCAGTCT CTCATCATCC TTCCTATGAA ACTTCATCAT
GTCTCTCAAA AGTCAAGCTG AATTTATCCA ATGCATTCTA TAAATACATA GTCTCTCTCC CTTCTATTCT TCATTGCAAC
ACATTTCCTC TGTAAATTAC TCACACCATA TTCCTAACTT CATTTCAGCA TCCTCTCTCC CACTTACTTG GATTTCATCA
ATTCCAATAA ATTCACACAC TTTTTTACAC TCTAACCACA ACATAAACAT ACACCACATG GGTTTGAAGG CCATGGACCA
AACTCCGTTG TTGTCCAAGA TGGCTATTGG GGATGGACAT GGTGAATCAT CCCCATACTT TGATGGATGG AAGGCTTATG
AAGAAAACCC CTTTCATCCC ACAGATAATC CTAACGGTGT TATGCAAATG GGTCTTGCTG AGAATCAGGT ATAAAGCGTA
TAAAACTTCA TTCCCAATGT CATGCAATTG CATAAACTCG GAGGGATATG GTATTATTTA TCTGCTGCTA ATTTACTTTC
TTAAATTTTT GCAGCTTACT TCTGATTTGG TTGAAGATTG GATACTGAAC AACCCTGAGG CCTCCATTTG CACTCCAGAA
GGAATAAATG ATTTCAGGGC CATAGCTAAC TTTCAGGATT ATCATGGTCT GGCCGAGTTC AGAAATGTGA GTTACAACAT
AAAGTGAAAT TTGATCACAA ACACTTTATG CATAAACTTC AAGTTGAGTT TGACTATTGA TAACATTTGA TGCACTCAAA
CTAAACGTGA ATTGCAAACT TGCACAGGCT GTGGCTAAAT TTATGGCTAG AACAAGGGGA AACAGAATCA CGTTTGACCC
TGACCGTATT GTCATGAGCG GTGGAGCCAC CGGAGCACAC GAAGTCACTG CCTTTTGTTT GGCAGATCCC GGTGAAGCAT
TCTTAGTGCC TATTCCCTAT TATCCAGGGT AATATATTCA ATTCAGTTTT TATTTCTTAA TTTTTTTTTT TCATTATTTT
TGGGGCATTA ATTTAGAAGA AGATGATGAT AATGAAGTAT TCTTATGTGT GTCATGACGT TTCTCAATTA GAGTATATTT
GATCTCCACC GAAAGAAGTA GCCTCTCTAT TCATTTAACA TACCATTAAG GTGCCTAGCT CCACTTAGTG GAATTCTTGA
TTAGAAAACA GGGTAATGAG ATTTGATGGC ACTACCTTTC TCTCTCTCAC AACATTGTAG TTTCAACCTT CCATTGGAAG
CAGTCAACGA TCCTATCAAA TAAAAAATGA AAGCCCTTAA ACTAAAGTCA AATTCAGACC ACAATTGAAT AGCAGTTTGA
TCATGAACAT TGTTCGATTA TTCATTGTCA GGCCATCACA GACTTTCTTT TATTCTTCCC ATTACAAGAA AAAATAAACC
AAGAGAAATT AGGTTATCAT ATAAATTAAT TTTATTGACA TGTACATCTT GATATTTGTT TCTTATAAGA ATCTGAATTT
CCTAATGCAG TTTTGACCGG GATTTGAGGT GGAGAACGGG AGTTAAACTT GTTCCAGTTA TGTGCGATAG CTCAAATAAT
TTCGTGTTGA CAAAGGAAGC ATTGGAAGAT GCCTATGAGA AAGCAAGAAA GGATAACATC AGAGTAAAGG GTTTACTCAT
CACCAATCCA TCAAATCCAT TAGGCACGAT CATGGACAGA AAGACACTGA GAACCGTGGT GAGCTTCATC AATGAGAAGC
GTATCCACCT TGTATGTGAT GAAATATATG CTGCAACAGT TTTCAGCCAC CCCGGTTTCA TAAGCATAGC CGAGATATTA
GAGGAAGAAA CAGACATAGA GTGTGACCGC AACCTCGTAC ACATTGTTTA TAGTCTTTCA AAGGACATGG GGTTCCCTGG
CTTCAGAGTT GGCATCATAT ACTCTTACAA TGATGCTGTG GTTAATTGTG CACGCAAAAT GTCAAGCTTT GGATTGGTGT
CAACACAGAC TCAGTATCTT TTAGCATCAA TGCTAAATGA TGATGAGTTT GTGGAGAGGT TTCTTGCAGA GAGTGCAAAG
AGGTTGGCTC AAAGGTTCAG GGTTTTCACT GGGGGGTTGG CCAAAGTTGG CATAAAGTGC TTGCAAAGCA ATGCCGGTCT
ATTTGTGTGG ATGGATTTAA GGCAACTTCT CAAAAAGCCA ACTTTCGACT CTGAAATGGA GCTTTGGAAA GTGATCATTC
ATGAAGTTAA GATCAATGTT TCACCTGGCT ATTCCTTCCA TTGCACTGAG CCAGGGTGGT TTAGGGTGTG CTATGCCAAC
ATGGATGATA TGGCTGTGCA AATTGCTTTG CAACGAATCC GCACCTTTGT GCTTCAAAAC AAGGAGGTCG TGGTGTCTAA
TAAGAAACAT TGTTGGCACA GCAACTTGAG GCTGAGCCTC AAAACCAGAA GGTTTGATGA TATCACCATG TCACCTCACT
CTCCCCTACC TCAGTCACCT ATGGTTAAAG CCACAAATTG AGTTTGCATA TTCCTCTGAA TCGTTTAGAA GAAGTAACTG
ATATGTGAAG ATTACTTGGT TCTTTTGTTT GTTATTTTGA GAAGGTACAT AAGTGCTGGA TTTGTTCTTT GGAACAGCAA
TAACAGGAAA TTGCTGATGT TGTTTTGTGA TCGGCATCAC AATCTAGTGT CCTACAAGTT GTGCTGCTTG ATGCACGCCC
CTTCAATCTT AGGGGCATTT TTTCTTTTTT CACTTACCAA AGGTTCAAGG TGAAAAAAGT TTATAGATTC TGTAATGTTA
TTGGTTTATC AAAAGAGTCC AAAAGATGTC TGTAATCTGC TACTGAAATT GTAACTTTCA ATTATGAATA AATTGTTAAT
GTAGGTCTTC AAATTCATTT CCATTTCGTA C

>Vigan.01G049100.01
TGCGTACCAA CTCTTGCCTA ATTTTCAAAC CAAGAGCCAC ACCGCAGTCT CTCATCATCC TTCCTATGAA ACTTCATCAT
GTCTCTCAAA AGTCAAGCTG AATTTATCCA ATGCATTCTA TAAATACATA GTCTCTCTCC CTTCTATTCT TCATTGCAAC
ACATTTCCTC TGTAAATTAC TCACACCATA TTCCTAACTT CATTTCAGCA TCCTCTCTCC CACTTACTTG GATTTCATCA
ATTCCAATAA ATTCACACAC TTTTTTACAC TCTAACCACA ACATAAACAT ACACCACATG GGTTTGAAGG CCATGGACCA
AACTCCGTTG TTGTCCAAGA TGGCTATTGG GGATGGACAT GGTGAATCAT CCCCATACTT TGATGGATGG AAGGCTTATG
AAGAAAACCC CTTTCATCCC ACAGATAATC CTAACGGTGT TATGCAAATG GGTCTTGCTG AGAATCAGCT TACTTCTGAT
TTGGTTGAAG ATTGGATACT GAACAACCCT GAGGCCTCCA TTTGCACTCC AGAAGGAATA AATGATTTCA GGGCCATAGC
TAACTTTCAG GATTATCATG GTCTGGCCGA GTTCAGAAAT GCTGTGGCTA AATTTATGGC TAGAACAAGG GGAAACAGAA
TCACGTTTGA CCCTGACCGT ATTGTCATGA GCGGTGGAGC CACCGGAGCA CACGAAGTCA CTGCCTTTTG TTTGGCAGAT
CCCGGTGAAG CATTCTTAGT GCCTATTCCC TATTATCCAG GTTTTGACCG GGATTTGAGG TGGAGAACGG GAGTTAAACT
TGTTCCAGTT ATGTGCGATA GCTCAAATAA TTTCGTGTTG ACAAAGGAAG CATTGGAAGA TGCCTATGAG AAAGCAAGAA
AGGATAACAT CAGAGTAAAG GGTTTACTCA TCACCAATCC ATCAAATCCA TTAGGCACGA TCATGGACAG AAAGACACTG
AGAACCGTGG TGAGCTTCAT CAATGAGAAG CGTATCCACC TTGTATGTGA TGAAATATAT GCTGCAACAG TTTTCAGCCA
CCCCGGTTTC ATAAGCATAG CCGAGATATT AGAGGAAGAA ACAGACATAG AGTGTGACCG CAACCTCGTA CACATTGTTT
ATAGTCTTTC AAAGGACATG GGGTTCCCTG GCTTCAGAGT TGGCATCATA TACTCTTACA ATGATGCTGT GGTTAATTGT
GCACGCAAAA TGTCAAGCTT TGGATTGGTG TCAACACAGA CTCAGTATCT TTTAGCATCA ATGCTAAATG ATGATGAGTT
TGTGGAGAGG TTTCTTGCAG AGAGTGCAAA GAGGTTGGCT CAAAGGTTCA GGGTTTTCAC TGGGGGGTTG GCCAAAGTTG
GCATAAAGTG CTTGCAAAGC AATGCCGGTC TATTTGTGTG GATGGATTTA AGGCAACTTC TCAAAAAGCC AACTTTCGAC
TCTGAAATGG AGCTTTGGAA AGTGATCATT CATGAAGTTA AGATCAATGT TTCACCTGGC TATTCCTTCC ATTGCACTGA
GCCAGGGTGG TTTAGGGTGT GCTATGCCAA CATGGATGAT ATGGCTGTGC AAATTGCTTT GCAACGAATC CGCACCTTTG
TGCTTCAAAA CAAGGAGGTC GTGGTGTCTA ATAAGAAACA TTGTTGGCAC AGCAACTTGA GGCTGAGCCT CAAAACCAGA
AGGTTTGATG ATATCACCAT GTCACCTCAC TCTCCCCTAC CTCAGTCACC TATGGTTAAA GCCACAAATT GAGTTTGCAT
ATTCCTCTGA ATCGTTTAGA AGAAGTAACT GATATGTGAA GATTACTTGG TTCTTTTGTT TGTTATTTTG AGAAGGTACA
TAAGTGCTGG ATTTGTTCTT TGGAACAGCA ATAACAGGAA ATTGCTGATG TTGTTTTGTG ATCGGCATCA CAATCTAGTG
TCCTACAAGT TGTGCTGCTT GATGCACGCC CCTTCAATCT TAGGGGCATT TTTTCTTTTT TCACTTACCA AAGGTTCAAG
GTGAAAAAAG TTTATAGATT CTGTAATGTT ATTGGTTTAT CAAAAGAGTC CAAAAGATGT CTGTAATCTG CTACTGAAAT
TGTAACTTTC AATTATGAAT AAATTGTTAA TGTAGGTCTT CAAATTCATT TCCATTTCGT AC

>Vigan.01G049100.01
ATGGGTTTGA AGGCCATGGA CCAAACTCCG TTGTTGTCCA AGATGGCTAT TGGGGATGGA CATGGTGAAT CATCCCCATA
CTTTGATGGA TGGAAGGCTT ATGAAGAAAA CCCCTTTCAT CCCACAGATA ATCCTAACGG TGTTATGCAA ATGGGTCTTG
CTGAGAATCA GCTTACTTCT GATTTGGTTG AAGATTGGAT ACTGAACAAC CCTGAGGCCT CCATTTGCAC TCCAGAAGGA
ATAAATGATT TCAGGGCCAT AGCTAACTTT CAGGATTATC ATGGTCTGGC CGAGTTCAGA AATGCTGTGG CTAAATTTAT
GGCTAGAACA AGGGGAAACA GAATCACGTT TGACCCTGAC CGTATTGTCA TGAGCGGTGG AGCCACCGGA GCACACGAAG
TCACTGCCTT TTGTTTGGCA GATCCCGGTG AAGCATTCTT AGTGCCTATT CCCTATTATC CAGGTTTTGA CCGGGATTTG
AGGTGGAGAA CGGGAGTTAA ACTTGTTCCA GTTATGTGCG ATAGCTCAAA TAATTTCGTG TTGACAAAGG AAGCATTGGA
AGATGCCTAT GAGAAAGCAA GAAAGGATAA CATCAGAGTA AAGGGTTTAC TCATCACCAA TCCATCAAAT CCATTAGGCA
CGATCATGGA CAGAAAGACA CTGAGAACCG TGGTGAGCTT CATCAATGAG AAGCGTATCC ACCTTGTATG TGATGAAATA
TATGCTGCAA CAGTTTTCAG CCACCCCGGT TTCATAAGCA TAGCCGAGAT ATTAGAGGAA GAAACAGACA TAGAGTGTGA
CCGCAACCTC GTACACATTG TTTATAGTCT TTCAAAGGAC ATGGGGTTCC CTGGCTTCAG AGTTGGCATC ATATACTCTT
ACAATGATGC TGTGGTTAAT TGTGCACGCA AAATGTCAAG CTTTGGATTG GTGTCAACAC AGACTCAGTA TCTTTTAGCA
TCAATGCTAA ATGATGATGA GTTTGTGGAG AGGTTTCTTG CAGAGAGTGC AAAGAGGTTG GCTCAAAGGT TCAGGGTTTT
CACTGGGGGG TTGGCCAAAG TTGGCATAAA GTGCTTGCAA AGCAATGCCG GTCTATTTGT GTGGATGGAT TTAAGGCAAC
TTCTCAAAAA GCCAACTTTC GACTCTGAAA TGGAGCTTTG GAAAGTGATC ATTCATGAAG TTAAGATCAA TGTTTCACCT
GGCTATTCCT TCCATTGCAC TGAGCCAGGG TGGTTTAGGG TGTGCTATGC CAACATGGAT GATATGGCTG TGCAAATTGC
TTTGCAACGA ATCCGCACCT TTGTGCTTCA AAACAAGGAG GTCGTGGTGT CTAATAAGAA ACATTGTTGG CACAGCAACT
TGAGGCTGAG CCTCAAAACC AGAAGGTTTG ATGATATCAC CATGTCACCT CACTCTCCCC TACCTCAGTC ACCTATGGTT
AAAGCCACAA ATTGA

>Vigan.01G049100.01
MGLKAMDQTP LLSKMAIGDG HGESSPYFDG WKAYEENPFH PTDNPNGVMQ MGLAENQLTS DLVEDWILNN PEASICTPEG
INDFRAIANF QDYHGLAEFR NAVAKFMART RGNRITFDPD RIVMSGGATG AHEVTAFCLA DPGEAFLVPI PYYPGFDRDL
RWRTGVKLVP VMCDSSNNFV LTKEALEDAY EKARKDNIRV KGLLITNPSN PLGTIMDRKT LRTVVSFINE KRIHLVCDEI
YAATVFSHPG FISIAEILEE ETDIECDRNL VHIVYSLSKD MGFPGFRVGI IYSYNDAVVN CARKMSSFGL VSTQTQYLLA
SMLNDDEFVE RFLAESAKRL AQRFRVFTGG LAKVGIKCLQ SNAGLFVWMD LRQLLKKPTF DSEMELWKVI IHEVKINVSP
GYSFHCTEPG WFRVCYANMD DMAVQIALQR IRTFVLQNKE VVVSNKKHCW HSNLRLSLKT RRFDDITMSP HSPLPQSPMV
KATN*