GBrowse Details

Vigan.01G044300.01

Basic Information:
Name: Vigan.01G044300.01
Multiple alignment
Variant Information
Position: Chr01:3211423..3213856 (+ strand)
Length: 2434
Functional Information:
Description: Similar to KAT8 regulatory NSL complex subunit 3-like. [XP_004503631.1, Cicer arietinum]
InterPro: KAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 protein (IPR026555)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.50,5.10,0.84,6.18,5.29,3.99,2 .33
Arabidopsis thaliana homolog: AT5G41850.1
Automatic updates:
Name: NM_001251236 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527322 (LOC100527322), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251236 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative alpha/beta hydrolase (LOC100527322), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3211423..3211483 (+ strand)
Length: 61
Type: five_prime_UTR
Position: Chr01:3211484..3211614 (+ strand)
Length: 131
Type: CDS
Position: Chr01:3211699..3211760 (+ strand)
Length: 62
Type: CDS
Position: Chr01:3211997..3212129 (+ strand)
Length: 133
Type: CDS
Position: Chr01:3212516..3212588 (+ strand)
Length: 73
Type: CDS
Position: Chr01:3213180..3213245 (+ strand)
Length: 66
Type: CDS
Position: Chr01:3213373..3213585 (+ strand)
Length: 213
Type: CDS
Position: Chr01:3213586..3213856 (+ strand)
Length: 271
Type: three_prime_UTR

>Vigan.01G044300.01 class=Sequence position=Chr01:3211423..3213856 (+ strand)
TACAAGTACA ATACACAAGT GGTTTCTTCT GATTCACTGG GGATTTCTCT GTTCCCAAGG CATGGATTTG TCACGCCCTG
CAAAACGTCA TCGTCGGAGC AAAGACGGTG GGAGTGAAGC ATCGACGTTG TCGCCGGTGG TGATCTTCGC TCACGGTGCT
GGTGCTCCTT CCTCTTCTGA TTGGATGCTA AGGTTACTCT GTTAATAAAA TTGAAAAAAG GGTTAAATCT TATTCTAGGT
TTTATTGTTA AAGATGCATC TCCATTTTTG TGATAGATGG AAGAATATGT TGAAAGAGGC ACTGCAAGCT GTTGATGTTG
TCACTTTTGA CTATCCTTGT GAGTTTGTTT CTTCTGTATT CCATTTTTTT CACTGGCATT AAAACACGCT TAAACCTAAA
GCATAAAACT TACTAGTACA AATTATAACT GCTCACAACG TTATTGACTT TTTTTTTTAA TTATTTTTTT GTACATAAAT
TTGTGACCTA TGAATTATTT CTATTGGAGT GAACCTCCTA ATGATTGTGT AGTGTTAAAT CTGAAGTGAC TTTGATGTGT
TTGTCATGGG CTAGACATGT CTGGAAAAAA GAGGGCTCCT CCTAAGGCTG AAAAACTTGT AGAGTTTCAC TCAAACATTG
TCAAGGAAAC TGCAACTAAG TACCCTGGTC ATCCCGTGGT ACTTGCAGGC AAATCAATGG GTTCAAGGTA GGTTCCAATA
TATATATTTT TTTGAAATGT GCATGTTGGA ATTGTCGGTT ATAGCAATTG AGGTAGACGT AATGAAGACT TTAATAATAG
TATTTTCTGA GTGTTGTGAT CTGCTACAAT GTGACGATGT TGTTCATAAG ATCTAGCACT TAGCCTCACT AAATAATAAC
TAAACAGTGA TGCAAATCAT GATATATTAG GAAATATGAG AACGATTAAA ACGAAGAAAT CGTAAGAGAT AATCTAAAAG
ATACATTAAA AATATTCGTA GATAGATATC TTTCACATGT TGGACATGTA TTTTTGCCTG AGGATGTCCC CATTATGATG
ATTGGTGTCA AGTTATTTGC GATGTCATGG ATCTTGAAAT TTTTTGGTTG TAGAGTTGGT TGCATGGTGG CAAGCATGGA
AGACAATAAT GTTTCTGCTG TAGTATGCTT GGGCTACCCA TTAAAGGTTT GATGTTCCTT TTTAGACTTC ATGCCAATCT
TTTTCACTAC AGTATAAACT GATTGCGTAT GTTTTTTTTT CTCCTTTTTC CTTGGCTGTA TTAAGGGTAA AAAATATGGT
TTCCAACTAT TTGTCTATCT TAGGGTATTC TCCTTGCCTC ATTTTATATT TTCTACATAA TTCAAAATCC ACTTACTCCT
TTTTTGTTCT TTAGTAATGA ATCTGTATTG TTTTGAACAT GCCCCGTTCA TAAGTATTTT GCTTACTATG TCATTTTGGT
CTTACGCTAA CCATCCTAAA TAAAATTGAT CAATTTAGTT GATGAAATTG TTCTCCATGG AGCCTGTGAT GTAGAACTCT
GAATCCAATA ATATTTATTA TGCTATTCCT TTGAATATTT TCCTTTTCCT TCCTTTCTGG CATTCTGTAT CCGTGTGCAC
TTTTCATACT CAGTTTTCTA TTTGAGCAAT TGTTGGCATG CCACATCTGT GACATTATAG CTGGTGCATT GGTTTTCTGT
GGGTGTTTTG GTAAAACAGT GAGGCCATTA AAATATCATA ACTAAGAATC ACGTTAGTTT AGTTACCAAT ATTGCAGGGA
ATGAATGGTG CAGTTAGAGA TGAAACATTG TTACAGCTAA CAATTCCTAC AATGTTTGTA CAGGTAGTTC TTTCTTTTCT
AGTTTGTCCT TAACCATTGT TGTATTGTAT AATCTCTACT GTGCGCAGAA ATTATTTATA TTATCTTAAT TAACCTTGTG
CATTTGTTTA TAATTATGTG TCTTGTGCAG GGCAGCAAGG ATGGTCTCTG TCCACTTGAG AAGTTAGAAG CCACAAGGAA
GAAAATGAAA GCACCCAACG ACCTGCATGT CATCGATGGT GGTGACCACT CTTTCAAAAT TGGTAAGAAG CACCTGCAAG
CAAGCAATTC CTCCCAAGAT GAAGCTGAAG AGGCTGCTGT GCAGGCCATT GCTGCTTTCA TTTCCAGGTC TCTTGAAGGA
TGAAGAATGC CCCTACGTTT GCTACCTTTC GAGGATATCA AGGTTGTATA TACGTATTGT TGTATTTTTC ATGGTAGTAA
TGTAGGTTTG ATCCTGTGGG TGGGTGGTAA TTATATTTTG GGGAATTTGG CCTTTTTCTT TTTCACTCAG CAGAATACAT
ATATCAATTC ACGGCTGCTG GAACTGATTA ACCTATTATG ACTGTTAGTT TAACTAAATG CAGTTTTATA TATATGTTAC
TATTGCGTGT TTGGATAGGC GTTTTCGTCT TGGA

>Vigan.01G044300.01
TACAAGTACA ATACACAAGT GGTTTCTTCT GATTCACTGG GGATTTCTCT GTTCCCAAGG CATGGATTTG TCACGCCCTG
CAAAACGTCA TCGTCGGAGC AAAGACGGTG GGAGTGAAGC ATCGACGTTG TCGCCGGTGG TGATCTTCGC TCACGGTGCT
GGTGCTCCTT CCTCTTCTGA TTGGATGCTA AGATGGAAGA ATATGTTGAA AGAGGCACTG CAAGCTGTTG ATGTTGTCAC
TTTTGACTAT CCTTACATGT CTGGAAAAAA GAGGGCTCCT CCTAAGGCTG AAAAACTTGT AGAGTTTCAC TCAAACATTG
TCAAGGAAAC TGCAACTAAG TACCCTGGTC ATCCCGTGGT ACTTGCAGGC AAATCAATGG GTTCAAGAGT TGGTTGCATG
GTGGCAAGCA TGGAAGACAA TAATGTTTCT GCTGTAGTAT GCTTGGGCTA CCCATTAAAG GGAATGAATG GTGCAGTTAG
AGATGAAACA TTGTTACAGC TAACAATTCC TACAATGTTT GTACAGGGCA GCAAGGATGG TCTCTGTCCA CTTGAGAAGT
TAGAAGCCAC AAGGAAGAAA ATGAAAGCAC CCAACGACCT GCATGTCATC GATGGTGGTG ACCACTCTTT CAAAATTGGT
AAGAAGCACC TGCAAGCAAG CAATTCCTCC CAAGATGAAG CTGAAGAGGC TGCTGTGCAG GCCATTGCTG CTTTCATTTC
CAGGTCTCTT GAAGGATGAA GAATGCCCCT ACGTTTGCTA CCTTTCGAGG ATATCAAGGT TGTATATACG TATTGTTGTA
TTTTTCATGG TAGTAATGTA GGTTTGATCC TGTGGGTGGG TGGTAATTAT ATTTTGGGGA ATTTGGCCTT TTTCTTTTTC
ACTCAGCAGA ATACATATAT CAATTCACGG CTGCTGGAAC TGATTAACCT ATTATGACTG TTAGTTTAAC TAAATGCAGT
TTTATATATA TGTTACTATT GCGTGTTTGG ATAGGCGTTT TCGTCTTGGA 

>Vigan.01G044300.01
ATGGATTTGT CACGCCCTGC AAAACGTCAT CGTCGGAGCA AAGACGGTGG GAGTGAAGCA TCGACGTTGT CGCCGGTGGT
GATCTTCGCT CACGGTGCTG GTGCTCCTTC CTCTTCTGAT TGGATGCTAA GATGGAAGAA TATGTTGAAA GAGGCACTGC
AAGCTGTTGA TGTTGTCACT TTTGACTATC CTTACATGTC TGGAAAAAAG AGGGCTCCTC CTAAGGCTGA AAAACTTGTA
GAGTTTCACT CAAACATTGT CAAGGAAACT GCAACTAAGT ACCCTGGTCA TCCCGTGGTA CTTGCAGGCA AATCAATGGG
TTCAAGAGTT GGTTGCATGG TGGCAAGCAT GGAAGACAAT AATGTTTCTG CTGTAGTATG CTTGGGCTAC CCATTAAAGG
GAATGAATGG TGCAGTTAGA GATGAAACAT TGTTACAGCT AACAATTCCT ACAATGTTTG TACAGGGCAG CAAGGATGGT
CTCTGTCCAC TTGAGAAGTT AGAAGCCACA AGGAAGAAAA TGAAAGCACC CAACGACCTG CATGTCATCG ATGGTGGTGA
CCACTCTTTC AAAATTGGTA AGAAGCACCT GCAAGCAAGC AATTCCTCCC AAGATGAAGC TGAAGAGGCT GCTGTGCAGG
CCATTGCTGC TTTCATTTCC AGGTCTCTTG AAGGATGA

>Vigan.01G044300.01
MDLSRPAKRH RRSKDGGSEA STLSPVVIFA HGAGAPSSSD WMLRWKNMLK EALQAVDVVT FDYPYMSGKK RAPPKAEKLV
EFHSNIVKET ATKYPGHPVV LAGKSMGSRV GCMVASMEDN NVSAVVCLGY PLKGMNGAVR DETLLQLTIP TMFVQGSKDG
LCPLEKLEAT RKKMKAPNDL HVIDGGDHSF KIGKKHLQAS NSSQDEAEEA AVQAIAAFIS RSLEG*