GBrowse Details

Vigan.01G041500.01

Basic Information:
Name: Vigan.01G041500.01
Multiple alignment
Variant Information
Position: Chr01:3020011..3022428 (+ strand)
Length: 2418
Functional Information:
Description: Similar to B2 protein-like. [XP_004503595.1, Cicer arietinum]
InterPro: Development/cell death domain (IPR013989)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:618.52,194.42,72.59,74.48,204.75,110.01,62.77,110.75
Arabidopsis thaliana homolog: AT5G42050.1
Automatic updates:
Name: NM_001252850 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max N-rich protein (NRP-B), mRNA.
PubMed ID: 18490446 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:3020011..3020563 (+ strand)
Length: 553
Type: five_prime_UTR
Position: Chr01:3020564..3021212 (+ strand)
Length: 649
Type: CDS
Position: Chr01:3021528..3021628 (+ strand)
Length: 101
Type: CDS
Position: Chr01:3021797..3021880 (+ strand)
Length: 84
Type: CDS
Position: Chr01:3021968..3022078 (+ strand)
Length: 111
Type: CDS
Position: Chr01:3022183..3022254 (+ strand)
Length: 72
Type: CDS
Position: Chr01:3022255..3022428 (+ strand)
Length: 174
Type: three_prime_UTR

>Vigan.01G041500.01 class=Sequence position=Chr01:3020011..3022428 (+ strand)
TAAATAATAA ACTAAAACTA ATTTTTATAC CATTATTTTC TCTTTATTTC ATGAAAATTT TACATAACAT CATTTTCTTA
CTAGTAAAAC AATTTCTTGG TGTGAACTCA AACTAAAGTA AACACGACTC TAACACCTTC TAGAAAATCA AACCCAACTT
CCACCTTCCA CTCTCTCTCT CTCTCTCTCT CTTCTCCACC TTGTCACGTG TACGCGTTTT GGCATCATCA TCACTCATCA
CTCACAAATA CCACCCCCAC CTAATTTAAA TTAAATTAAA AAAAAAGACA ATTTTCCTTT CACATTCGAC AATTACACAC
GCAACCCTGT AACTTTCCAC GAAGTTTCAT TTCATCTCAT TTACCTTTTT CATCTTTTCA TCTCCACGCT CTTCCATCTT
ATTTATGCCA ACACCAGTCA TCGCATCACA AAATTTTTTC ATTCAAACCT CAACCGGTTT CCTTCCATTT CTTCCTGCTT
CCACTTGGCC AATCAGTACA ACATTTTTGT CACACAAAGT AGCTACCTTT GAATTCGTTT TTTGCAGCAA ATCATGGAGA
ATAATCAGTC TTTCTGGCAA TTCAGTGACC AGCTGCGTCT GCAGACATCC AATTTGGCAA ACCTCTCTCT GAATGATTCG
ATTTGGAGCA ACAGCTACGT GTCCAAGAGG CGTGATGAAA GGATTAATTT TGACATCAAA GTGGGTGGTG AGATCAACTC
TTTCAAGTCA AAGGAGTCTG CTTCTGATTT CAAGGATAAC ATGAACGGAT CTTTTCTTGC CATGAGTTAC AACAACAACA
ACCTCAACCA CAACAATAAC AACATTCTGG GTGTTGGTTT GGATGCTGGG GTGGGTCTCA ATGGAGGCTT CAACAAGGGA
ATCTACTCCA AACCTGCCTT TGCCAATCTT AACACTAACA TTAACCTCAA TATCAATCCT AAGGGGCACA AGGGTAAGGC
CGAAGATGAC CTTCTTCACC CTCCCAAATC TTCCAAGAAA AACAACAACC CCAACAAGAA ACACGACAGT AACAACAGCG
CCGGCAACAA TGATAACGGC AAGGATTCCA AGGCTGCTGC CGACAAGAGA TTCAAAACAC TGCCACCGTC GGAGTCTCTT
CCCAGGAATG AAACCATTGG AGGCTACATC TTCGTTTGCA ACAATGACAC CATGGCTGAA AATCTCAAGA GGCAACTCTT
CGGTATGTTC TGGTTTTTTC CTTCCTTCTC TTGTTTCTCG ATTATGCAGT TTTGTGCTGT ATGTGATGTT ACGTACTTCA
GATTTTGTAT TGTCTCTGGA ATTGAATCAT TGAACTGATA AATTGTCATT ATGCCGAGAA ATTGATCCCA CCCATTTTTC
TCTTTTTAAC ACCTTAGTAA ATAAATGTTG TCGATGAATC ATTTTTGTGA AAAAAAAAAG TTTATGCCGG TAGCTGTTAA
AGTGAGGACC ATGTATTCTT TGACATATGA TTGATGCTGA TTAAGGTCGT TTTATCTGAA ATTTTTTGTG CTTTTAGGTC
TGCCACCACG TTACAGAGAT TCTGTTCGGG CCATTACTCC AGGGTTGCCC CTTTTCCTTT ACAACTATTC CACTCACCAA
CTCCATGGAA TCTTTGAGGT GTGTTATCTG TTACCAATTC AACATCTTTT TAGTCTAACG AGACACCTTG TTCTGGACCC
AATTTGCATT AAATTAAAGA TCTGGCCATT AGATTAACAT TTAATAGCTT CATATTTTGA GGAATTTTGA GTTAAAGAGT
CATAACATGT GGTGGGATTT GTTCAGGCTG CAGGTTTTGG AGGAACAAAC ATTGATCCAA TGGCTTGGGA GGATAAGAAA
TGCCCCGGTG AATCTCGTTT CCCTGCTCAG GTAACTTAGT CATACCAATG ATTATAGCTC TGTTCTTACA CAATTGGGTG
TGTGTGATTG AATAATGTTC ATAAATGATG ATTACAGGTG AGAGTGATCA CAAGGAAAAC ATGTGAACCA CTGGAGGAGG
ACTCATTCAG ACCAATCCTT CACCACTATG ATGGTCCCAA GTTTCGTCTT GAGCTGAACG TGCCTGAGGT ATTTTCTTTT
TATCTTTATC TTTATCTTAC TGAATATCGA TACCCTTTGG AAGAAGATAA CACAATCCAC TGATCAAACC CTGCCCCATT
TTTTGTTTAT AGGCCTTGTC TCTGCTCGAT ATTTTTGCTG AACAAGATAC TTTCAACGAT ACTTTCAAGG CTTTCGATGC
ATAAAAGGAC AAAAATAGCA AAGAATACAA GAACATCACT CACACAGACG ATAGATAATA TTATAGATTT GGGTTGGTTT
GGAAGTTATT AAGTGTAATG GACTTAAGGA AAAAGTCCGA AAGATAAAAC AAAATGAATA TAGCGGAGGA TGTTGCATGT
TCAGCAACCT ATATGTAT

>Vigan.01G041500.01
TAAATAATAA ACTAAAACTA ATTTTTATAC CATTATTTTC TCTTTATTTC ATGAAAATTT TACATAACAT CATTTTCTTA
CTAGTAAAAC AATTTCTTGG TGTGAACTCA AACTAAAGTA AACACGACTC TAACACCTTC TAGAAAATCA AACCCAACTT
CCACCTTCCA CTCTCTCTCT CTCTCTCTCT CTTCTCCACC TTGTCACGTG TACGCGTTTT GGCATCATCA TCACTCATCA
CTCACAAATA CCACCCCCAC CTAATTTAAA TTAAATTAAA AAAAAAGACA ATTTTCCTTT CACATTCGAC AATTACACAC
GCAACCCTGT AACTTTCCAC GAAGTTTCAT TTCATCTCAT TTACCTTTTT CATCTTTTCA TCTCCACGCT CTTCCATCTT
ATTTATGCCA ACACCAGTCA TCGCATCACA AAATTTTTTC ATTCAAACCT CAACCGGTTT CCTTCCATTT CTTCCTGCTT
CCACTTGGCC AATCAGTACA ACATTTTTGT CACACAAAGT AGCTACCTTT GAATTCGTTT TTTGCAGCAA ATCATGGAGA
ATAATCAGTC TTTCTGGCAA TTCAGTGACC AGCTGCGTCT GCAGACATCC AATTTGGCAA ACCTCTCTCT GAATGATTCG
ATTTGGAGCA ACAGCTACGT GTCCAAGAGG CGTGATGAAA GGATTAATTT TGACATCAAA GTGGGTGGTG AGATCAACTC
TTTCAAGTCA AAGGAGTCTG CTTCTGATTT CAAGGATAAC ATGAACGGAT CTTTTCTTGC CATGAGTTAC AACAACAACA
ACCTCAACCA CAACAATAAC AACATTCTGG GTGTTGGTTT GGATGCTGGG GTGGGTCTCA ATGGAGGCTT CAACAAGGGA
ATCTACTCCA AACCTGCCTT TGCCAATCTT AACACTAACA TTAACCTCAA TATCAATCCT AAGGGGCACA AGGGTAAGGC
CGAAGATGAC CTTCTTCACC CTCCCAAATC TTCCAAGAAA AACAACAACC CCAACAAGAA ACACGACAGT AACAACAGCG
CCGGCAACAA TGATAACGGC AAGGATTCCA AGGCTGCTGC CGACAAGAGA TTCAAAACAC TGCCACCGTC GGAGTCTCTT
CCCAGGAATG AAACCATTGG AGGCTACATC TTCGTTTGCA ACAATGACAC CATGGCTGAA AATCTCAAGA GGCAACTCTT
CGGTCTGCCA CCACGTTACA GAGATTCTGT TCGGGCCATT ACTCCAGGGT TGCCCCTTTT CCTTTACAAC TATTCCACTC
ACCAACTCCA TGGAATCTTT GAGGCTGCAG GTTTTGGAGG AACAAACATT GATCCAATGG CTTGGGAGGA TAAGAAATGC
CCCGGTGAAT CTCGTTTCCC TGCTCAGGTG AGAGTGATCA CAAGGAAAAC ATGTGAACCA CTGGAGGAGG ACTCATTCAG
ACCAATCCTT CACCACTATG ATGGTCCCAA GTTTCGTCTT GAGCTGAACG TGCCTGAGGC CTTGTCTCTG CTCGATATTT
TTGCTGAACA AGATACTTTC AACGATACTT TCAAGGCTTT CGATGCATAA AAGGACAAAA ATAGCAAAGA ATACAAGAAC
ATCACTCACA CAGACGATAG ATAATATTAT AGATTTGGGT TGGTTTGGAA GTTATTAAGT GTAATGGACT TAAGGAAAAA
GTCCGAAAGA TAAAACAAAA TGAATATAGC GGAGGATGTT GCATGTTCAG CAACCTATAT GTAT

>Vigan.01G041500.01
ATGGAGAATA ATCAGTCTTT CTGGCAATTC AGTGACCAGC TGCGTCTGCA GACATCCAAT TTGGCAAACC TCTCTCTGAA
TGATTCGATT TGGAGCAACA GCTACGTGTC CAAGAGGCGT GATGAAAGGA TTAATTTTGA CATCAAAGTG GGTGGTGAGA
TCAACTCTTT CAAGTCAAAG GAGTCTGCTT CTGATTTCAA GGATAACATG AACGGATCTT TTCTTGCCAT GAGTTACAAC
AACAACAACC TCAACCACAA CAATAACAAC ATTCTGGGTG TTGGTTTGGA TGCTGGGGTG GGTCTCAATG GAGGCTTCAA
CAAGGGAATC TACTCCAAAC CTGCCTTTGC CAATCTTAAC ACTAACATTA ACCTCAATAT CAATCCTAAG GGGCACAAGG
GTAAGGCCGA AGATGACCTT CTTCACCCTC CCAAATCTTC CAAGAAAAAC AACAACCCCA ACAAGAAACA CGACAGTAAC
AACAGCGCCG GCAACAATGA TAACGGCAAG GATTCCAAGG CTGCTGCCGA CAAGAGATTC AAAACACTGC CACCGTCGGA
GTCTCTTCCC AGGAATGAAA CCATTGGAGG CTACATCTTC GTTTGCAACA ATGACACCAT GGCTGAAAAT CTCAAGAGGC
AACTCTTCGG TCTGCCACCA CGTTACAGAG ATTCTGTTCG GGCCATTACT CCAGGGTTGC CCCTTTTCCT TTACAACTAT
TCCACTCACC AACTCCATGG AATCTTTGAG GCTGCAGGTT TTGGAGGAAC AAACATTGAT CCAATGGCTT GGGAGGATAA
GAAATGCCCC GGTGAATCTC GTTTCCCTGC TCAGGTGAGA GTGATCACAA GGAAAACATG TGAACCACTG GAGGAGGACT
CATTCAGACC AATCCTTCAC CACTATGATG GTCCCAAGTT TCGTCTTGAG CTGAACGTGC CTGAGGCCTT GTCTCTGCTC
GATATTTTTG CTGAACAAGA TACTTTCAAC GATACTTTCA AGGCTTTCGA TGCATAA

>Vigan.01G041500.01
MENNQSFWQF SDQLRLQTSN LANLSLNDSI WSNSYVSKRR DERINFDIKV GGEINSFKSK ESASDFKDNM NGSFLAMSYN
NNNLNHNNNN ILGVGLDAGV GLNGGFNKGI YSKPAFANLN TNINLNINPK GHKGKAEDDL LHPPKSSKKN NNPNKKHDSN
NSAGNNDNGK DSKAAADKRF KTLPPSESLP RNETIGGYIF VCNNDTMAEN LKRQLFGLPP RYRDSVRAIT PGLPLFLYNY
STHQLHGIFE AAGFGGTNID PMAWEDKKCP GESRFPAQVR VITRKTCEPL EEDSFRPILH HYDGPKFRLE LNVPEALSLL
DIFAEQDTFN DTFKAFDA*