GBrowse Details

Vigan.01G018300.01

Basic Information:
Name: Vigan.01G018300.01
Multiple alignment
Variant Information
Position: Chr01:1118383..1120224 (- strand)
Length: 1842
Functional Information:
Description: Similar to Uncharacterized protein. [I1K5P2, Glycine max]
GO: Biological Process: microtubule-based process (GO:0007017)
Cellular Component: microtubule associated complex (GO:0005875)
InterPro: Dynein light chain, type 1/2 (IPR001372)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.52,0.14,0.08,0.27,0.00,1.15,0.27
Arabidopsis thaliana homolog: AT1G23220.1
Automatic updates:
Name: NM_001249819 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305536 (LOC100305536), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:1118383..1118680 (- strand)
Length: 298
Type: three_prime_UTR
Position: Chr01:1118681..1118839 (- strand)
Length: 159
Type: CDS
Position: Chr01:1119705..1119950 (- strand)
Length: 246
Type: CDS
Position: Chr01:1119951..1120224 (- strand)
Length: 274
Type: five_prime_UTR

>Vigan.01G018300.01 class=Sequence position=Chr01:1118383..1120224 (- strand)
ATACAACAAC AAATGCATGC ATTAAAAGAA CCACCGCAAC TCAAAAACCA ATACCAAACC CCACAAAGAG AGTCGCACTA
CACAATACAA AATTTTTGTT TGTGTCTTAA TCTCGCCATA CTTATTCCCT CTTACTTTCT CTTTGTTCCT TTACTCTCTT
AGGGGCCCCT CCAGGGGACA ATAGAGTGCA AAGGGTATTT GATCCTGCTT TATCTGAGAA AGCAAGAGTG CAAGGGAAGA
AAAGGGTTTG ATGTGTGTGT GAGTTGGGAA GAAAATGGCG GGGGGTGCAG AGGAGGAGCT AGAAAGAAGA AGCAGGTTCC
TTAAAGGCTT GATACAGAAG AAGAAAGCCA TTGAGCAACA AGAGCAGCAT GATCACCTAC AGCACAATAA CGTTCGTGTC
AGAGCTTGTG ACATGCCTCT CCCTCTTCAG AATTCTGCCT TTCGTTGTGC ACGTGATCTT CTCGATACTA TGCCACCAAA
GAAGCTTGAT AGCAAACGCC TTGCCCTCGC ACTTAAGAAG GTTGCCTTTC TTTTAGTTAC TGTTTCTGTT TATTTCTATT
TTTGTTTTCT TTACAAGATC TGTTTCTGGA TTCTGATCTT TTTCCACATA CCTGGTGTGA AATCTCAATG GCTAATTTGG
AAGCTTTTGA AATGGGAAAA GTGCTCTGAT GTGACAAACC GTTATCTCAG CTCTCCTATG TTTATTCTTA TTCCTCAATT
TAGTAGTACT TTATGTTGGT TGTTTGATCT TCTTGATCAA AGTCCTTTTT GTTAATTTGT TTTAAAATCT CGAGTTATAT
CAGTTGGTTT TGATTTGGGG TATTGGTATT TTTGTCGATT GAATGAACAT CCTCTATAGA ATGGCAAGTT GTTTGCTAGT
TTCAAAATGG AACTAAGCTT GTTTGAAATT GATCTGCTAT TTTATCTTTC TTGCGGGGTT GTGGCGATTT GTTTGGTGAA
GGAAGGTTTG ATTTTGCGTG GTACTCAGGC TCTGTAGCTA TCCTGCAGTA TACAAACATA GCTTGTATCA GAAAAGATTG
AAAATGACAC GTTAAGCTGG TTTTACTTTG AGTATACAGA TGAAGAAAGG ATATTGAACA CCCTCGGGAG TTGCCTTATG
AGGCTCACCA TGGTAACTCT GTGGTCCAAT TAAGATTAAA TTATCTTGTT GTAGTGAAAT GTGAAGAACA ATACGGTAGT
AGATGTATGG TTAACAAGAC TCATACTGAT AATAAGAAAA TGCATAAGTG GAAGATTAGA AGAATGAATA GGACAGCAAG
CATAGTGTAT TGAATTTAAA TCTCACTGCT CATTTCATTC CCTGTTTGTG AACTTTGTTT GTTCCTTGCT TGAATGGGTC
AGACAAAAAC TTTATTGTTT TGCAGGAATT TGATTCTTCG TATGGTCCAG CATGGCACTG CATAGTGGGG ACTAGTTTTG
GCTCCTATGT TACTCACTCT GTTGGTGGTT TCTTGTATTT TTCCATTGAC AAAGTTTATA TCCTTCTCTT CAAGACAGCA
GTTGAACCAT TAGACCATTC ATAACTTCGA TTTGCAAAAC TCCTTGGAAA CATCAAATAA TTTAGTACTT TAAACCAGCT
GAGTGAAACT GCAAATTGTA AAATTTAAAC ACATTTGTAT TCTGTGAAGT ATTTGATGCA CTTCAGTTTG CATTCGAGTG
TGGAATTTGT TCTGACAAGT GAAAGGATAC TCTTTCTTCA GCTCAGAAAT AGACAACTTT ACACAATTTC ACTCTCGATT
TCGCACTTAA CAATTAACAT TTGTTCATTA TATACAAATC TATTATCTAT CTGAGACTTT TCAATAACAC AGCAGATCTT
TG

>Vigan.01G018300.01
ATACAACAAC AAATGCATGC ATTAAAAGAA CCACCGCAAC TCAAAAACCA ATACCAAACC CCACAAAGAG AGTCGCACTA
CACAATACAA AATTTTTGTT TGTGTCTTAA TCTCGCCATA CTTATTCCCT CTTACTTTCT CTTTGTTCCT TTACTCTCTT
AGGGGCCCCT CCAGGGGACA ATAGAGTGCA AAGGGTATTT GATCCTGCTT TATCTGAGAA AGCAAGAGTG CAAGGGAAGA
AAAGGGTTTG ATGTGTGTGT GAGTTGGGAA GAAAATGGCG GGGGGTGCAG AGGAGGAGCT AGAAAGAAGA AGCAGGTTCC
TTAAAGGCTT GATACAGAAG AAGAAAGCCA TTGAGCAACA AGAGCAGCAT GATCACCTAC AGCACAATAA CGTTCGTGTC
AGAGCTTGTG ACATGCCTCT CCCTCTTCAG AATTCTGCCT TTCGTTGTGC ACGTGATCTT CTCGATACTA TGCCACCAAA
GAAGCTTGAT AGCAAACGCC TTGCCCTCGC ACTTAAGAAG GAATTTGATT CTTCGTATGG TCCAGCATGG CACTGCATAG
TGGGGACTAG TTTTGGCTCC TATGTTACTC ACTCTGTTGG TGGTTTCTTG TATTTTTCCA TTGACAAAGT TTATATCCTT
CTCTTCAAGA CAGCAGTTGA ACCATTAGAC CATTCATAAC TTCGATTTGC AAAACTCCTT GGAAACATCA AATAATTTAG
TACTTTAAAC CAGCTGAGTG AAACTGCAAA TTGTAAAATT TAAACACATT TGTATTCTGT GAAGTATTTG ATGCACTTCA
GTTTGCATTC GAGTGTGGAA TTTGTTCTGA CAAGTGAAAG GATACTCTTT CTTCAGCTCA GAAATAGACA ACTTTACACA
ATTTCACTCT CGATTTCGCA CTTAACAATT AACATTTGTT CATTATATAC AAATCTATTA TCTATCTGAG ACTTTTCAAT
AACACAGCAG ATCTTTG

>Vigan.01G018300.01
ATGGCGGGGG GTGCAGAGGA GGAGCTAGAA AGAAGAAGCA GGTTCCTTAA AGGCTTGATA CAGAAGAAGA AAGCCATTGA
GCAACAAGAG CAGCATGATC ACCTACAGCA CAATAACGTT CGTGTCAGAG CTTGTGACAT GCCTCTCCCT CTTCAGAATT
CTGCCTTTCG TTGTGCACGT GATCTTCTCG ATACTATGCC ACCAAAGAAG CTTGATAGCA AACGCCTTGC CCTCGCACTT
AAGAAGGAAT TTGATTCTTC GTATGGTCCA GCATGGCACT GCATAGTGGG GACTAGTTTT GGCTCCTATG TTACTCACTC
TGTTGGTGGT TTCTTGTATT TTTCCATTGA CAAAGTTTAT ATCCTTCTCT TCAAGACAGC AGTTGAACCA TTAGACCATT
CATAA

>Vigan.01G018300.01
MAGGAEEELE RRSRFLKGLI QKKKAIEQQE QHDHLQHNNV RVRACDMPLP LQNSAFRCAR DLLDTMPPKK LDSKRLALAL
KKEFDSSYGP AWHCIVGTSF GSYVTHSVGG FLYFSIDKVY ILLFKTAVEP LDHS*