GBrowse Details

Vigan.01G008800.01

Basic Information:
Name: Vigan.01G008800.01
Multiple alignment
Variant Information
Position: Chr01:539315..541728 (+ strand)
Length: 2414
Functional Information:
Description: Similar to ACC-oxidase. [O04076, Phaseolus angularis]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.45,8.48,1.62,16.19,4.04,2.94, 3.55
Automatic updates:
Name: NM_001255906 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-aminocyclopropane-1-carboxylate oxidase-like (LOC100819184), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255906 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-aminocyclopropane-1-carboxylate oxidase-like (LOC100819184), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001329813 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis 1-aminocyclopropane-1-carboxylate oxidase-like (LOC108323412), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:539315..539712 (+ strand)
Length: 398
Type: five_prime_UTR
Position: Chr01:539713..539817 (+ strand)
Length: 105
Type: CDS
Position: Chr01:539907..540133 (+ strand)
Length: 227
Type: CDS
Position: Chr01:540300..540633 (+ strand)
Length: 334
Type: CDS
Position: Chr01:540818..541084 (+ strand)
Length: 267
Type: CDS
Position: Chr01:541085..541728 (+ strand)
Length: 644
Type: three_prime_UTR

>Vigan.01G008800.01 class=Sequence position=Chr01:539315..541728 (+ strand)
AAGTGGTGTT AAATATATTT TTTTCACATT TATATGATTT TTTCTTCCAA AAATAAATCC CATAAAGCTT GCACTACCTT
CTAAGAAAGG AGTAGCATAA CTCCAAAAAG GTCATGGGAA AATGCTAGGA AAGTTATGTT TGCATTAGCC ACCACAAGTG
TCCAACGTAT ACCAAAATAG ACAATTCAAC CACGTAAACT GTTTTTGGCG TATAATGATT GTCCTTACTA ACTACTGAAC
ATGCATCTCA TGATTCATGA TCAACACACC AAAATTTACT TCTTTTAGTG TCCTTGCTCT TCCACTATAA ATACCACACA
CCTAGCTTTG CATAAACACA CACACATTTA CACTCTCAAA CATTAAGATA AGGGAACAAG AGATTGAAGA AGTGAGAGAT
GGAGAACTTC CCAGTGATCA ACCTTGAGAA TATCAATGGT GAGGAGAGAA AGGCTGTCCT AGAGAAAATC GAAGATGCTT
GTGAAAACTG GGGATTTTTT GAGGTACCCC ACAGAAATAT ATTTGCTACC ATAAGTTTTC TTCATGTTCA TTTTTACCAA
ACTGATGATG TTGCTTTCTT TCCTAATTGT AGTTGGTAAA TCATGGAATA CCCCTTGAAC TTTTGGATAC TGTGGAAAGG
TTAACGAAAG AGCATTATAG GAAATGCATG GAGCAAAGGT TCAAGGAGGC AGTGGCAAGC AAGGGATTGG AGGGTGTCCA
AGGTGAAATA AAGGACATGG ACTGGGAGAG CACCTTCTTC TTGCGCCATC TTCCACATTC AAACATCTCT GAAATTCCTG
ATCTCAGTGA AGAGTACAGG TAAGGCAAAT TGAAAACTAA GATATGCTTC ATGCATGCAT GTGAATATTG AAACTACCAT
AAGTAAGAAT GTGTGATTTG GCTGATGAAA TTGATAATGT GATGATATCT TGTACTGTCT GCATAAAACA CAGACATGGT
CTGAACTAGA TGGGTGTGAA TGCAGGAAGG CAATGAAGGA CTTTGCACAA AAATTGGAGA AACTTGCAGA GGAGCTGCTT
GACCTTTTGT GTGAAAATCT TGGATTAGAG AAAGGGTACC TGAAGAAAGC CTTCTATGGA TCAAAGGGTC CAAATTTTGG
CACAAAGGTA GCAAACTACC CTCCATGTCC GAAGCCAGAG CTGGTGAAGG GTCTTCGTGC TCATACAGAT GCAGGTGGGA
TTATCCTTCT CTTGCAAGAT GACAAGGTCA GTGGCCTGCA GCTTCTCAAA GATGGCCAGT GGGTGGATGT GCCTCCAATG
CGCCACTCCA TTGTTGTTAA CCTTGGTGAC CAGCTTGAGG TACATTCTTT CAGTACTGAA ATAATACGTC TCTAATAGGA
TAATGGAATA GTCTTCAATT CTGGTTATGA TTCTAAGAAT ATTTAGAGTA TACAAGTGGA TGCAAACCTC GTCTTACAAA
CCGGTTTTGT AAGGTTGAAT TAGGCTTAAA GTCTATTTTT TAACACATTT TTTGATGAAA CAGGTAATTA CCAATGGGAA
ATACAAAAGT GTGGAGCACC GTGTGATTGC TAGAACTGAT GGGACTAGAA TGTCCATAGC CTCATTCTAC AACCCTGCTG
GTGATGCTGT TATCTATCCT GCACCAGCAT TGCTGGAGAG AAAAACACAA GTGATAGACA AAGTATACCC AAAATTTGTG
TTTGAGGATT ACATGAGGCT CTACGCTACA CTGAAGTTCC AACCAAAGGA ACCAAGATTT GAAGCTATGA AAGGCGTGAA
CACAGTTTAG TTAGTTCCAA CCAAACAACT TAATTGGAGC TGTGCTATAC TATACTGCTA GAAGAAATTT TATTGATTTG
GAAGAAGTGA GGAAATAGAA TGCAATTAAG CAAGAAATAA TGGTTGTTTA ATCATTCAAT TTCTTAATAC AGTGGATTGT
TTATTTGTAC TTCAGAATTG TTGAAATAAT ATGCAACATT TCTACTCGTT CTATCTTAAC CTTGCTGGGT CCACCTTACC
CAATTTGTAA AGTGCAATAA ACATGAACTC AATATATGAC AGTACACCCA ACACCAGCAC ATGAAAAATA GAAATGGTAG
CTACCAGAAT AGGCAAGACA ACTGCATTAT CTATATCGGT CCACCAACTT AATGCTCAAG ATCAGATTAC AACGGTATTT
AATTCACCAA AAGAATTATT GAATCAGTAT TTTGTGACAT GATTCAACCA AAAGAATTAG TGCTAAAAAA ACTTGCCAAC
TTTCATCTAA ATATTTACCA GACTATGTTC TCTGGCGGTA TTGGTTCATA GACTCTGTCT GTAACCTTCC TTGCCTGAGT
ATGAAAACAA CTGGTCTCAC GTGCTACCAT CAAAACTAAT AAAATTTACC ACTATTTCCA TCAAGAGTAA CATCCAAGCT
CAACAAAAGA ACAG

>Vigan.01G008800.01
AAGTGGTGTT AAATATATTT TTTTCACATT TATATGATTT TTTCTTCCAA AAATAAATCC CATAAAGCTT GCACTACCTT
CTAAGAAAGG AGTAGCATAA CTCCAAAAAG GTCATGGGAA AATGCTAGGA AAGTTATGTT TGCATTAGCC ACCACAAGTG
TCCAACGTAT ACCAAAATAG ACAATTCAAC CACGTAAACT GTTTTTGGCG TATAATGATT GTCCTTACTA ACTACTGAAC
ATGCATCTCA TGATTCATGA TCAACACACC AAAATTTACT TCTTTTAGTG TCCTTGCTCT TCCACTATAA ATACCACACA
CCTAGCTTTG CATAAACACA CACACATTTA CACTCTCAAA CATTAAGATA AGGGAACAAG AGATTGAAGA AGTGAGAGAT
GGAGAACTTC CCAGTGATCA ACCTTGAGAA TATCAATGGT GAGGAGAGAA AGGCTGTCCT AGAGAAAATC GAAGATGCTT
GTGAAAACTG GGGATTTTTT GAGTTGGTAA ATCATGGAAT ACCCCTTGAA CTTTTGGATA CTGTGGAAAG GTTAACGAAA
GAGCATTATA GGAAATGCAT GGAGCAAAGG TTCAAGGAGG CAGTGGCAAG CAAGGGATTG GAGGGTGTCC AAGGTGAAAT
AAAGGACATG GACTGGGAGA GCACCTTCTT CTTGCGCCAT CTTCCACATT CAAACATCTC TGAAATTCCT GATCTCAGTG
AAGAGTACAG GAAGGCAATG AAGGACTTTG CACAAAAATT GGAGAAACTT GCAGAGGAGC TGCTTGACCT TTTGTGTGAA
AATCTTGGAT TAGAGAAAGG GTACCTGAAG AAAGCCTTCT ATGGATCAAA GGGTCCAAAT TTTGGCACAA AGGTAGCAAA
CTACCCTCCA TGTCCGAAGC CAGAGCTGGT GAAGGGTCTT CGTGCTCATA CAGATGCAGG TGGGATTATC CTTCTCTTGC
AAGATGACAA GGTCAGTGGC CTGCAGCTTC TCAAAGATGG CCAGTGGGTG GATGTGCCTC CAATGCGCCA CTCCATTGTT
GTTAACCTTG GTGACCAGCT TGAGGTAATT ACCAATGGGA AATACAAAAG TGTGGAGCAC CGTGTGATTG CTAGAACTGA
TGGGACTAGA ATGTCCATAG CCTCATTCTA CAACCCTGCT GGTGATGCTG TTATCTATCC TGCACCAGCA TTGCTGGAGA
GAAAAACACA AGTGATAGAC AAAGTATACC CAAAATTTGT GTTTGAGGAT TACATGAGGC TCTACGCTAC ACTGAAGTTC
CAACCAAAGG AACCAAGATT TGAAGCTATG AAAGGCGTGA ACACAGTTTA GTTAGTTCCA ACCAAACAAC TTAATTGGAG
CTGTGCTATA CTATACTGCT AGAAGAAATT TTATTGATTT GGAAGAAGTG AGGAAATAGA ATGCAATTAA GCAAGAAATA
ATGGTTGTTT AATCATTCAA TTTCTTAATA CAGTGGATTG TTTATTTGTA CTTCAGAATT GTTGAAATAA TATGCAACAT
TTCTACTCGT TCTATCTTAA CCTTGCTGGG TCCACCTTAC CCAATTTGTA AAGTGCAATA AACATGAACT CAATATATGA
CAGTACACCC AACACCAGCA CATGAAAAAT AGAAATGGTA GCTACCAGAA TAGGCAAGAC AACTGCATTA TCTATATCGG
TCCACCAACT TAATGCTCAA GATCAGATTA CAACGGTATT TAATTCACCA AAAGAATTAT TGAATCAGTA TTTTGTGACA
TGATTCAACC AAAAGAATTA GTGCTAAAAA AACTTGCCAA CTTTCATCTA AATATTTACC AGACTATGTT CTCTGGCGGT
ATTGGTTCAT AGACTCTGTC TGTAACCTTC CTTGCCTGAG TATGAAAACA ACTGGTCTCA CGTGCTACCA TCAAAACTAA
TAAAATTTAC CACTATTTCC ATCAAGAGTA ACATCCAAGC TCAACAAAAG AACAG

>Vigan.01G008800.01
ATGGAGAACT TCCCAGTGAT CAACCTTGAG AATATCAATG GTGAGGAGAG AAAGGCTGTC CTAGAGAAAA TCGAAGATGC
TTGTGAAAAC TGGGGATTTT TTGAGTTGGT AAATCATGGA ATACCCCTTG AACTTTTGGA TACTGTGGAA AGGTTAACGA
AAGAGCATTA TAGGAAATGC ATGGAGCAAA GGTTCAAGGA GGCAGTGGCA AGCAAGGGAT TGGAGGGTGT CCAAGGTGAA
ATAAAGGACA TGGACTGGGA GAGCACCTTC TTCTTGCGCC ATCTTCCACA TTCAAACATC TCTGAAATTC CTGATCTCAG
TGAAGAGTAC AGGAAGGCAA TGAAGGACTT TGCACAAAAA TTGGAGAAAC TTGCAGAGGA GCTGCTTGAC CTTTTGTGTG
AAAATCTTGG ATTAGAGAAA GGGTACCTGA AGAAAGCCTT CTATGGATCA AAGGGTCCAA ATTTTGGCAC AAAGGTAGCA
AACTACCCTC CATGTCCGAA GCCAGAGCTG GTGAAGGGTC TTCGTGCTCA TACAGATGCA GGTGGGATTA TCCTTCTCTT
GCAAGATGAC AAGGTCAGTG GCCTGCAGCT TCTCAAAGAT GGCCAGTGGG TGGATGTGCC TCCAATGCGC CACTCCATTG
TTGTTAACCT TGGTGACCAG CTTGAGGTAA TTACCAATGG GAAATACAAA AGTGTGGAGC ACCGTGTGAT TGCTAGAACT
GATGGGACTA GAATGTCCAT AGCCTCATTC TACAACCCTG CTGGTGATGC TGTTATCTAT CCTGCACCAG CATTGCTGGA
GAGAAAAACA CAAGTGATAG ACAAAGTATA CCCAAAATTT GTGTTTGAGG ATTACATGAG GCTCTACGCT ACACTGAAGT
TCCAACCAAA GGAACCAAGA TTTGAAGCTA TGAAAGGCGT GAACACAGTT TAG

>Vigan.01G008800.01
MENFPVINLE NINGEERKAV LEKIEDACEN WGFFELVNHG IPLELLDTVE RLTKEHYRKC MEQRFKEAVA SKGLEGVQGE
IKDMDWESTF FLRHLPHSNI SEIPDLSEEY RKAMKDFAQK LEKLAEELLD LLCENLGLEK GYLKKAFYGS KGPNFGTKVA
NYPPCPKPEL VKGLRAHTDA GGIILLLQDD KVSGLQLLKD GQWVDVPPMR HSIVVNLGDQ LEVITNGKYK SVEHRVIART
DGTRMSIASF YNPAGDAVIY PAPALLERKT QVIDKVYPKF VFEDYMRLYA TLKFQPKEPR FEAMKGVNTV *