GBrowse Details

Vigan.01G007800.01

Basic Information:
Name: Vigan.01G007800.01
Multiple alignment
Variant Information
Position: Chr01:471746..473610 (- strand)
Length: 1865
Functional Information:
Description: Similar to Rack. [B7T1N8, Phaseolus vulgaris]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: WD40 repeat (IPR001680)
WD40/YVTN repeat-like-containing domain (IPR015943)
WD40-repeat-containing domain (IPR017986)
WD40 repeat, conserved site (IPR019775)
G-protein beta WD-40 repeat (IPR020472)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:151.50,397.12,230.41,129.79,454.90,7 30.43,185.31,161.53
Arabidopsis thaliana homolog: AT1G18080.1, AT1G48630.1, AT3G18130.1
Automatic updates:
Name: NM_001248440 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max G beta-like protein (LOC547868), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254526 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max guanine nucleotide-binding protein subunit beta-like protein-like (LOC100778205), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:471746..471989 (- strand)
Length: 244
Type: three_prime_UTR
Position: Chr01:471990..472091 (- strand)
Length: 102
Type: CDS
Position: Chr01:472653..473525 (- strand)
Length: 873
Type: CDS
Position: Chr01:473526..473610 (- strand)
Length: 85
Type: five_prime_UTR

>Vigan.01G007800.01 class=Sequence position=Chr01:471746..473610 (- strand)
AAACACAAAA GCCTCACGCA GAGTACGGGA ACTCGAAAAC CCTAGTAATC TCATTTCTGT GTGTTTGTGT TCCTGTGAGA
GAAAAATGGC AGAGGGTCTC GTTCTCCGCG GCACCATGCG CGCCCACACC GACGTCGTAA CGGCGATTGC CACTCCCATT
GACAACTCCG ACATGATAGT CACGGCTTCG CGCGACAAAT CCATCATCTT GTGGCAACTC ACCAAGGAGG ACAAGACCTA
CGGTGTCCCA CGCCGCCGTT TAACCGGTCA CTCCCACTTT GTTCAGGATG TTGTTCTATC TTCTGACGGA CAGTTTGCGC
TTTCCGGCTC CTGGGACGGT GAGCTCCGCC TCTGGGACCT TGCAGCCGGC ACCTCCGCGC GCCGTTTTGT TGGACACACC
AAGGACGTCC TCTCTGTGGC GTTCTCCATC GACAACCGTC AGATCGTGTC GGCCTCGCGT GACCGCACAA TCAAACTGTG
GAATACCCTT GGTGAATGCA AGTACACCAT TCAAGACAGT GATGCTCATT CTGATTGGGT TAGCTGTGTG CGTTTCAGCC
CTAGCACTCT TCAGCCGACT ATTGTGTCTG CATCTTGGGA CCGCACTGTT AAGGTGTGGA ACCTCACGAA CTGCAAGCTG
AGAAATACCC TTGCTGGACA CAGTGGGTAT GTGAACACTG TTGCTGTTTC TCCCGATGGT TCTCTGTGTG CCAGTGGTGG
AAAAGATGGA GTTATTTTGC TGTGGGATTT GGCTGAGGGT AAGCGTCTCT ACTCTCTCGA TGCTGGCTCT ATTATCCATG
CCCTCTGCTT CAGTCCCAAC AGGTACTGGC TGTGCGCCGC CACCGAGCAG AGCATCAAGA TCTGGGATTT GGAGAGTAAG
AGTATTGTTG AGGATTTGAA GGTGGACCTT AAGACGGAGG CCGATGGTAC CACCGGTGGC AACACAAACA AAAAGAAGGT
ACTTTTGGAT ATGGTTTTGA TTTTTACACT GGTAGTTAAT GTAATGTTAT TGATTATACT CATTATAATT GCTGAATTTA
ATAATTCACA TAACCATATC CTCTGTTGTG GATTGAATTG TAGTTTTACA TCACGATTAA ACTTTAAAAA TTATGTCTTT
TCTTGTATAA TTGGCTTGAT TTTATTTTCA ATTTATTCAG TATTATTATG CATTGTAGTG TATCTTTACA ATTTGTTTAT
TTACAGATAT GTTTTATCTG TTTAAATGTG TTCCATTTAC TTTAATAAGG AATTGTTTAT TGTGTGGTCA AGTGTCTTTG
GAGAGAAAGT TGGCTAACCA TTTTATTTCT TAGCGGGGGA AATGTTTGTA ATACCAGATA CTGAAATATT TTATATCCAA
TTTCCCTGGA GTTAAGAAAG AAATCTATTA CAGAAGTTCT TCCCTTATCA CTTTGTTTTA TGTTCGTAGC TATTACATTT
GCAATAATTG TAAGACTTTA AATTGTAAGA TGTGTCGCTT AATTTTGTAA TGTTTTTAAT TGGTATGAAT ATTTTGCAGG
TCATCTATTG CACGAGTTTG AATTGGAGTG CAGATGGAAG CACTTTGTTT AGTGGTTATA CTGATGGCGT GGTCAGAGTT
TGGGCAATTG GACGTTATTA GGTTAAGCTT TTAGTGTTTT CAGATGAAAA TCAGCTTTGA GTTTTGGGAC AAAGTTACTG
CTTTACTGTA GAATTGATTT TTATGTTCAA GACCGTGGCT TTGAGACCTT CTATTTATTT TTGAAACGTT GTTTTTGGTT
TTTACTTACA TGGATATTTC AAAATCTTGG ATTCCATCTA CCAATATCAT CTTTAGAAAA TTTTCGAGAT ATTCCAATTA
AAAGAGAAGC TCTGTTGTTT ATTCA

>Vigan.01G007800.01
AAACACAAAA GCCTCACGCA GAGTACGGGA ACTCGAAAAC CCTAGTAATC TCATTTCTGT GTGTTTGTGT TCCTGTGAGA
GAAAAATGGC AGAGGGTCTC GTTCTCCGCG GCACCATGCG CGCCCACACC GACGTCGTAA CGGCGATTGC CACTCCCATT
GACAACTCCG ACATGATAGT CACGGCTTCG CGCGACAAAT CCATCATCTT GTGGCAACTC ACCAAGGAGG ACAAGACCTA
CGGTGTCCCA CGCCGCCGTT TAACCGGTCA CTCCCACTTT GTTCAGGATG TTGTTCTATC TTCTGACGGA CAGTTTGCGC
TTTCCGGCTC CTGGGACGGT GAGCTCCGCC TCTGGGACCT TGCAGCCGGC ACCTCCGCGC GCCGTTTTGT TGGACACACC
AAGGACGTCC TCTCTGTGGC GTTCTCCATC GACAACCGTC AGATCGTGTC GGCCTCGCGT GACCGCACAA TCAAACTGTG
GAATACCCTT GGTGAATGCA AGTACACCAT TCAAGACAGT GATGCTCATT CTGATTGGGT TAGCTGTGTG CGTTTCAGCC
CTAGCACTCT TCAGCCGACT ATTGTGTCTG CATCTTGGGA CCGCACTGTT AAGGTGTGGA ACCTCACGAA CTGCAAGCTG
AGAAATACCC TTGCTGGACA CAGTGGGTAT GTGAACACTG TTGCTGTTTC TCCCGATGGT TCTCTGTGTG CCAGTGGTGG
AAAAGATGGA GTTATTTTGC TGTGGGATTT GGCTGAGGGT AAGCGTCTCT ACTCTCTCGA TGCTGGCTCT ATTATCCATG
CCCTCTGCTT CAGTCCCAAC AGGTACTGGC TGTGCGCCGC CACCGAGCAG AGCATCAAGA TCTGGGATTT GGAGAGTAAG
AGTATTGTTG AGGATTTGAA GGTGGACCTT AAGACGGAGG CCGATGGTAC CACCGGTGGC AACACAAACA AAAAGAAGGT
CATCTATTGC ACGAGTTTGA ATTGGAGTGC AGATGGAAGC ACTTTGTTTA GTGGTTATAC TGATGGCGTG GTCAGAGTTT
GGGCAATTGG ACGTTATTAG GTTAAGCTTT TAGTGTTTTC AGATGAAAAT CAGCTTTGAG TTTTGGGACA AAGTTACTGC
TTTACTGTAG AATTGATTTT TATGTTCAAG ACCGTGGCTT TGAGACCTTC TATTTATTTT TGAAACGTTG TTTTTGGTTT
TTACTTACAT GGATATTTCA AAATCTTGGA TTCCATCTAC CAATATCATC TTTAGAAAAT TTTCGAGATA TTCCAATTAA
AAGAGAAGCT CTGTTGTTTA TTCA

>Vigan.01G007800.01
ATGGCAGAGG GTCTCGTTCT CCGCGGCACC ATGCGCGCCC ACACCGACGT CGTAACGGCG ATTGCCACTC CCATTGACAA
CTCCGACATG ATAGTCACGG CTTCGCGCGA CAAATCCATC ATCTTGTGGC AACTCACCAA GGAGGACAAG ACCTACGGTG
TCCCACGCCG CCGTTTAACC GGTCACTCCC ACTTTGTTCA GGATGTTGTT CTATCTTCTG ACGGACAGTT TGCGCTTTCC
GGCTCCTGGG ACGGTGAGCT CCGCCTCTGG GACCTTGCAG CCGGCACCTC CGCGCGCCGT TTTGTTGGAC ACACCAAGGA
CGTCCTCTCT GTGGCGTTCT CCATCGACAA CCGTCAGATC GTGTCGGCCT CGCGTGACCG CACAATCAAA CTGTGGAATA
CCCTTGGTGA ATGCAAGTAC ACCATTCAAG ACAGTGATGC TCATTCTGAT TGGGTTAGCT GTGTGCGTTT CAGCCCTAGC
ACTCTTCAGC CGACTATTGT GTCTGCATCT TGGGACCGCA CTGTTAAGGT GTGGAACCTC ACGAACTGCA AGCTGAGAAA
TACCCTTGCT GGACACAGTG GGTATGTGAA CACTGTTGCT GTTTCTCCCG ATGGTTCTCT GTGTGCCAGT GGTGGAAAAG
ATGGAGTTAT TTTGCTGTGG GATTTGGCTG AGGGTAAGCG TCTCTACTCT CTCGATGCTG GCTCTATTAT CCATGCCCTC
TGCTTCAGTC CCAACAGGTA CTGGCTGTGC GCCGCCACCG AGCAGAGCAT CAAGATCTGG GATTTGGAGA GTAAGAGTAT
TGTTGAGGAT TTGAAGGTGG ACCTTAAGAC GGAGGCCGAT GGTACCACCG GTGGCAACAC AAACAAAAAG AAGGTCATCT
ATTGCACGAG TTTGAATTGG AGTGCAGATG GAAGCACTTT GTTTAGTGGT TATACTGATG GCGTGGTCAG AGTTTGGGCA
ATTGGACGTT ATTAG

>Vigan.01G007800.01
MAEGLVLRGT MRAHTDVVTA IATPIDNSDM IVTASRDKSI ILWQLTKEDK TYGVPRRRLT GHSHFVQDVV LSSDGQFALS
GSWDGELRLW DLAAGTSARR FVGHTKDVLS VAFSIDNRQI VSASRDRTIK LWNTLGECKY TIQDSDAHSD WVSCVRFSPS
TLQPTIVSAS WDRTVKVWNL TNCKLRNTLA GHSGYVNTVA VSPDGSLCAS GGKDGVILLW DLAEGKRLYS LDAGSIIHAL
CFSPNRYWLC AATEQSIKIW DLESKSIVED LKVDLKTEAD GTTGGNTNKK KVIYCTSLNW SADGSTLFSG YTDGVVRVWA
IGRY*